Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01680 and H281DRAFT_01681 overlap by 1 nucleotides H281DRAFT_01681 and H281DRAFT_01682 are separated by 2 nucleotides H281DRAFT_01682 and H281DRAFT_01683 overlap by 4 nucleotides H281DRAFT_01683 and H281DRAFT_01684 are separated by 194 nucleotides H281DRAFT_01684 and H281DRAFT_01685 are separated by 184 nucleotides
H281DRAFT_01680: H281DRAFT_01680 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 563,788 to 565,011
_01680
H281DRAFT_01681: H281DRAFT_01681 - Acyl dehydratase, at 565,011 to 565,478
_01681
H281DRAFT_01682: H281DRAFT_01682 - Predicted enzyme related to lactoylglutathione lyase, at 565,481 to 565,873
_01682
H281DRAFT_01683: H281DRAFT_01683 - ketopantoate reductase (EC 1.1.1.169), at 565,870 to 566,820
_01683
H281DRAFT_01684: H281DRAFT_01684 - transcriptional regulator, TetR family, at 567,015 to 567,590
_01684
H281DRAFT_01685: H281DRAFT_01685 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 567,775 to 569,184
_01685
Position (kb) 565
566
567 Strain fitness (log2 ratio) -2
-1
0
1 at 565.345 kb on - strand, within H281DRAFT_01681 at 565.405 kb on + strand, within H281DRAFT_01681 at 565.451 kb on - strand at 565.466 kb on + strand at 565.528 kb on + strand, within H281DRAFT_01682 at 565.529 kb on - strand, within H281DRAFT_01682 at 565.529 kb on - strand, within H281DRAFT_01682 at 565.854 kb on + strand at 566.198 kb on + strand, within H281DRAFT_01683 at 566.210 kb on + strand, within H281DRAFT_01683 at 566.210 kb on + strand, within H281DRAFT_01683 at 566.211 kb on - strand, within H281DRAFT_01683 at 566.444 kb on + strand, within H281DRAFT_01683 at 566.444 kb on + strand, within H281DRAFT_01683 at 567.043 kb on + strand at 567.044 kb on - strand at 567.121 kb on + strand, within H281DRAFT_01684 at 567.121 kb on + strand, within H281DRAFT_01684 at 567.122 kb on - strand, within H281DRAFT_01684 at 567.256 kb on + strand, within H281DRAFT_01684 at 567.454 kb on + strand, within H281DRAFT_01684 at 567.454 kb on + strand, within H281DRAFT_01684 at 567.455 kb on - strand, within H281DRAFT_01684 at 567.455 kb on - strand, within H281DRAFT_01684 at 567.500 kb on + strand, within H281DRAFT_01684 at 567.774 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 565,345 - H281DRAFT_01681 0.71 +0.0 565,405 + H281DRAFT_01681 0.84 -0.3 565,451 - -0.0 565,466 + -0.6 565,528 + H281DRAFT_01682 0.12 -1.3 565,529 - H281DRAFT_01682 0.12 -0.1 565,529 - H281DRAFT_01682 0.12 +0.1 565,854 + +0.4 566,198 + H281DRAFT_01683 0.34 -0.1 566,210 + H281DRAFT_01683 0.36 -0.8 566,210 + H281DRAFT_01683 0.36 +0.1 566,211 - H281DRAFT_01683 0.36 +1.0 566,444 + H281DRAFT_01683 0.60 -0.5 566,444 + H281DRAFT_01683 0.60 +0.6 567,043 + -2.2 567,044 - -2.5 567,121 + H281DRAFT_01684 0.18 -1.1 567,121 + H281DRAFT_01684 0.18 +0.4 567,122 - H281DRAFT_01684 0.19 -1.7 567,256 + H281DRAFT_01684 0.42 -0.6 567,454 + H281DRAFT_01684 0.76 -2.1 567,454 + H281DRAFT_01684 0.76 -0.9 567,455 - H281DRAFT_01684 0.76 -0.0 567,455 - H281DRAFT_01684 0.76 -0.8 567,500 + H281DRAFT_01684 0.84 -2.0 567,774 + +0.0
Or see this region's nucleotide sequence