Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01416 and H281DRAFT_01417 are separated by 311 nucleotides H281DRAFT_01417 and H281DRAFT_01418 are separated by 106 nucleotides H281DRAFT_01418 and H281DRAFT_01419 are separated by 502 nucleotides H281DRAFT_01419 and H281DRAFT_01420 are separated by 82 nucleotides
H281DRAFT_01416: H281DRAFT_01416 - NADH dehydrogenase, at 268,257 to 269,486
_01416
H281DRAFT_01417: H281DRAFT_01417 - anti-sigma-28 factor, FlgM family, at 269,798 to 270,109
_01417
H281DRAFT_01418: H281DRAFT_01418 - Signal transduction histidine kinase, at 270,216 to 274,808
_01418
H281DRAFT_01419: H281DRAFT_01419 - Protein of unknown function (DUF2945), at 275,311 to 275,526
_01419
H281DRAFT_01420: H281DRAFT_01420 - oxidoreductase alpha (molybdopterin) subunit, at 275,609 to 278,026
_01420
Position (kb) 270
271
272
273
274
275 Strain fitness (log2 ratio) -1
0
1 at 269.289 kb on - strand, within H281DRAFT_01416 at 269.627 kb on + strand at 269.628 kb on - strand at 269.628 kb on - strand at 269.926 kb on + strand, within H281DRAFT_01417 at 269.941 kb on + strand, within H281DRAFT_01417 at 270.140 kb on + strand at 270.395 kb on + strand at 270.396 kb on - strand at 270.701 kb on - strand, within H281DRAFT_01418 at 270.895 kb on - strand, within H281DRAFT_01418 at 271.007 kb on + strand, within H281DRAFT_01418 at 271.007 kb on + strand, within H281DRAFT_01418 at 271.007 kb on + strand, within H281DRAFT_01418 at 271.008 kb on - strand, within H281DRAFT_01418 at 271.129 kb on - strand at 271.322 kb on - strand, within H281DRAFT_01418 at 271.322 kb on - strand at 271.483 kb on - strand, within H281DRAFT_01418 at 271.670 kb on + strand, within H281DRAFT_01418 at 271.671 kb on - strand, within H281DRAFT_01418 at 271.671 kb on - strand, within H281DRAFT_01418 at 271.973 kb on - strand, within H281DRAFT_01418 at 272.125 kb on + strand, within H281DRAFT_01418 at 272.126 kb on - strand, within H281DRAFT_01418 at 272.126 kb on - strand, within H281DRAFT_01418 at 272.175 kb on - strand, within H281DRAFT_01418 at 272.237 kb on + strand, within H281DRAFT_01418 at 272.318 kb on + strand, within H281DRAFT_01418 at 272.318 kb on + strand, within H281DRAFT_01418 at 272.320 kb on + strand, within H281DRAFT_01418 at 272.837 kb on - strand, within H281DRAFT_01418 at 273.006 kb on + strand, within H281DRAFT_01418 at 273.397 kb on + strand, within H281DRAFT_01418 at 273.672 kb on + strand at 273.781 kb on + strand, within H281DRAFT_01418 at 273.813 kb on - strand, within H281DRAFT_01418 at 274.230 kb on + strand, within H281DRAFT_01418 at 274.231 kb on - strand, within H281DRAFT_01418 at 274.231 kb on - strand, within H281DRAFT_01418 at 274.231 kb on - strand, within H281DRAFT_01418 at 274.231 kb on - strand, within H281DRAFT_01418 at 274.402 kb on + strand at 274.465 kb on - strand at 274.840 kb on + strand at 274.851 kb on + strand at 274.986 kb on - strand at 275.344 kb on - strand, within H281DRAFT_01419 at 275.385 kb on - strand, within H281DRAFT_01419 at 275.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 269,289 - H281DRAFT_01416 0.84 +0.1 269,627 + -0.0 269,628 - +0.2 269,628 - -0.8 269,926 + H281DRAFT_01417 0.41 -1.1 269,941 + H281DRAFT_01417 0.46 +0.6 270,140 + -0.7 270,395 + +0.4 270,396 - -0.5 270,701 - H281DRAFT_01418 0.11 -0.4 270,895 - H281DRAFT_01418 0.15 -0.9 271,007 + H281DRAFT_01418 0.17 +0.3 271,007 + H281DRAFT_01418 0.17 -0.4 271,007 + H281DRAFT_01418 0.17 -0.7 271,008 - H281DRAFT_01418 0.17 +0.6 271,129 - +1.4 271,322 - H281DRAFT_01418 0.24 +0.2 271,322 - -0.1 271,483 - H281DRAFT_01418 0.28 -0.2 271,670 + H281DRAFT_01418 0.32 +0.4 271,671 - H281DRAFT_01418 0.32 -0.1 271,671 - H281DRAFT_01418 0.32 +0.4 271,973 - H281DRAFT_01418 0.38 +0.5 272,125 + H281DRAFT_01418 0.42 +0.6 272,126 - H281DRAFT_01418 0.42 +0.4 272,126 - H281DRAFT_01418 0.42 -0.1 272,175 - H281DRAFT_01418 0.43 -0.3 272,237 + H281DRAFT_01418 0.44 -0.5 272,318 + H281DRAFT_01418 0.46 +0.7 272,318 + H281DRAFT_01418 0.46 -0.2 272,320 + H281DRAFT_01418 0.46 +0.9 272,837 - H281DRAFT_01418 0.57 +0.3 273,006 + H281DRAFT_01418 0.61 -0.3 273,397 + H281DRAFT_01418 0.69 +0.7 273,672 + +0.4 273,781 + H281DRAFT_01418 0.78 -0.0 273,813 - H281DRAFT_01418 0.78 +0.3 274,230 + H281DRAFT_01418 0.87 -0.1 274,231 - H281DRAFT_01418 0.87 +0.8 274,231 - H281DRAFT_01418 0.87 -0.4 274,231 - H281DRAFT_01418 0.87 -0.2 274,231 - H281DRAFT_01418 0.87 -0.3 274,402 + +0.1 274,465 - -0.7 274,840 + -1.3 274,851 + +0.5 274,986 - -0.3 275,344 - H281DRAFT_01419 0.15 -0.3 275,385 - H281DRAFT_01419 0.34 +0.3 275,594 - +0.4
Or see this region's nucleotide sequence