Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01240 and H281DRAFT_01241 are separated by 14 nucleotides H281DRAFT_01241 and H281DRAFT_01242 are separated by 255 nucleotides H281DRAFT_01242 and H281DRAFT_01243 are separated by 57 nucleotides
H281DRAFT_01240: H281DRAFT_01240 - hypothetical protein, at 76,463 to 77,380
_01240
H281DRAFT_01241: H281DRAFT_01241 - mandelamide amidase, at 77,395 to 78,849
_01241
H281DRAFT_01242: H281DRAFT_01242 - CDP-diacylglycerol pyrophosphatase, at 79,105 to 79,746
_01242
H281DRAFT_01243: H281DRAFT_01243 - lipoprotein, YaeC family, at 79,804 to 80,616
_01243
Position (kb) 77
78
79 Strain fitness (log2 ratio) -1
0
1 at 76.427 kb on - strand at 76.479 kb on + strand at 76.479 kb on + strand at 76.480 kb on - strand at 76.480 kb on - strand at 76.480 kb on - strand at 76.602 kb on - strand, within H281DRAFT_01240 at 76.725 kb on - strand, within H281DRAFT_01240 at 76.901 kb on + strand, within H281DRAFT_01240 at 76.902 kb on - strand, within H281DRAFT_01240 at 77.062 kb on + strand, within H281DRAFT_01240 at 77.062 kb on + strand, within H281DRAFT_01240 at 77.805 kb on + strand, within H281DRAFT_01241 at 77.805 kb on + strand, within H281DRAFT_01241 at 78.092 kb on + strand, within H281DRAFT_01241 at 78.093 kb on - strand, within H281DRAFT_01241 at 78.517 kb on + strand, within H281DRAFT_01241 at 78.517 kb on + strand, within H281DRAFT_01241 at 78.648 kb on + strand, within H281DRAFT_01241 at 78.673 kb on - strand, within H281DRAFT_01241 at 78.818 kb on + strand at 78.875 kb on + strand at 79.213 kb on + strand, within H281DRAFT_01242 at 79.213 kb on + strand, within H281DRAFT_01242 at 79.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 76,427 - -0.9 76,479 + +0.2 76,479 + -0.4 76,480 - -0.0 76,480 - +0.5 76,480 - -0.2 76,602 - H281DRAFT_01240 0.15 -0.2 76,725 - H281DRAFT_01240 0.29 +0.4 76,901 + H281DRAFT_01240 0.48 +0.2 76,902 - H281DRAFT_01240 0.48 -0.1 77,062 + H281DRAFT_01240 0.65 -0.4 77,062 + H281DRAFT_01240 0.65 -0.2 77,805 + H281DRAFT_01241 0.28 -0.3 77,805 + H281DRAFT_01241 0.28 +0.2 78,092 + H281DRAFT_01241 0.48 +0.6 78,093 - H281DRAFT_01241 0.48 +0.3 78,517 + H281DRAFT_01241 0.77 -0.3 78,517 + H281DRAFT_01241 0.77 -0.2 78,648 + H281DRAFT_01241 0.86 -1.0 78,673 - H281DRAFT_01241 0.88 -0.1 78,818 + -0.5 78,875 + +0.3 79,213 + H281DRAFT_01242 0.17 -0.2 79,213 + H281DRAFT_01242 0.17 +0.1 79,744 + -0.4
Or see this region's nucleotide sequence