Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01034

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01033 and H281DRAFT_01034 are separated by 33 nucleotidesH281DRAFT_01034 and H281DRAFT_01035 are separated by 630 nucleotides H281DRAFT_01033: H281DRAFT_01033 - DNA-binding transcriptional regulator, LysR family, at 1,161,085 to 1,161,966 _01033 H281DRAFT_01034: H281DRAFT_01034 - Outer membrane protein (porin), at 1,162,000 to 1,162,827 _01034 H281DRAFT_01035: H281DRAFT_01035 - TPR repeat-containing protein, at 1,163,458 to 1,164,300 _01035 Position (kb) 1161 1162 1163Strain fitness (log2 ratio) -2 -1 0 1at 1161.013 kb on - strandat 1161.587 kb on + strand, within H281DRAFT_01033at 1162.125 kb on - strand, within H281DRAFT_01034at 1162.127 kb on + strand, within H281DRAFT_01034at 1162.136 kb on + strand, within H281DRAFT_01034at 1162.189 kb on - strand, within H281DRAFT_01034at 1162.274 kb on + strand, within H281DRAFT_01034at 1162.275 kb on - strand, within H281DRAFT_01034at 1162.422 kb on - strand, within H281DRAFT_01034at 1162.425 kb on + strand, within H281DRAFT_01034at 1162.426 kb on - strand, within H281DRAFT_01034at 1163.039 kb on - strandat 1163.575 kb on + strandat 1163.737 kb on + strand, within H281DRAFT_01035

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,161,013 - +0.8
1,161,587 + H281DRAFT_01033 0.57 +0.4
1,162,125 - H281DRAFT_01034 0.15 -0.1
1,162,127 + H281DRAFT_01034 0.15 -0.2
1,162,136 + H281DRAFT_01034 0.16 -1.8
1,162,189 - H281DRAFT_01034 0.23 +0.3
1,162,274 + H281DRAFT_01034 0.33 -0.7
1,162,275 - H281DRAFT_01034 0.33 -0.2
1,162,422 - H281DRAFT_01034 0.51 -0.0
1,162,425 + H281DRAFT_01034 0.51 -0.4
1,162,426 - H281DRAFT_01034 0.51 +0.7
1,163,039 - -0.6
1,163,575 + +0.4
1,163,737 + H281DRAFT_01035 0.33 -1.1

Or see this region's nucleotide sequence