Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01014

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01012 and H281DRAFT_01013 are separated by 33 nucleotidesH281DRAFT_01013 and H281DRAFT_01014 are separated by 66 nucleotidesH281DRAFT_01014 and H281DRAFT_01015 are separated by 96 nucleotidesH281DRAFT_01015 and H281DRAFT_01016 are separated by 140 nucleotides H281DRAFT_01012: H281DRAFT_01012 - Ribosomal protein S18 acetylase RimI, at 1,138,424 to 1,138,873 _01012 H281DRAFT_01013: H281DRAFT_01013 - hypothetical protein, at 1,138,907 to 1,139,377 _01013 H281DRAFT_01014: H281DRAFT_01014 - glutathione S-transferase, at 1,139,444 to 1,140,139 _01014 H281DRAFT_01015: H281DRAFT_01015 - uncharacterized peroxidase-related enzyme, at 1,140,236 to 1,140,781 _01015 H281DRAFT_01016: H281DRAFT_01016 - Nitroreductase, at 1,140,922 to 1,141,557 _01016 Position (kb) 1139 1140 1141Strain fitness (log2 ratio) -1 0 1at 1138.665 kb on + strandat 1140.808 kb on + strandat 1141.109 kb on + strand, within H281DRAFT_01016

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,138,665 + -0.2
1,140,808 + -0.8
1,141,109 + H281DRAFT_01016 0.29 +0.4

Or see this region's nucleotide sequence