Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00605 and H281DRAFT_00606 are separated by 166 nucleotides H281DRAFT_00606 and H281DRAFT_00607 are separated by 81 nucleotides H281DRAFT_00607 and H281DRAFT_00608 are separated by 120 nucleotides
H281DRAFT_00605: H281DRAFT_00605 - peptide deformylase, at 678,778 to 679,311
_00605
H281DRAFT_00606: H281DRAFT_00606 - 23S rRNA pseudouridine2604 synthase, at 679,478 to 680,209
_00606
H281DRAFT_00607: H281DRAFT_00607 - hypothetical protein, at 680,291 to 681,580
_00607
H281DRAFT_00608: H281DRAFT_00608 - UTP--GlnB (protein PII) uridylyltransferase, GlnD, at 681,701 to 684,280
_00608
Position (kb) 680
681
682 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 679.299 kb on + strand at 679.503 kb on + strand at 679.504 kb on - strand at 679.504 kb on - strand at 679.788 kb on + strand, within H281DRAFT_00606 at 679.788 kb on + strand, within H281DRAFT_00606 at 679.788 kb on + strand, within H281DRAFT_00606 at 679.789 kb on - strand, within H281DRAFT_00606 at 679.789 kb on - strand, within H281DRAFT_00606 at 680.016 kb on + strand, within H281DRAFT_00606 at 680.029 kb on + strand, within H281DRAFT_00606 at 680.118 kb on - strand, within H281DRAFT_00606 at 680.861 kb on - strand, within H281DRAFT_00607 at 681.611 kb on - strand at 681.611 kb on - strand at 681.871 kb on - strand at 681.871 kb on - strand at 681.912 kb on + strand at 681.915 kb on + strand at 682.074 kb on + strand, within H281DRAFT_00608 at 682.075 kb on - strand, within H281DRAFT_00608 at 682.111 kb on + strand, within H281DRAFT_00608 at 682.225 kb on - strand, within H281DRAFT_00608 at 682.354 kb on - strand, within H281DRAFT_00608 at 682.546 kb on + strand, within H281DRAFT_00608 at 682.546 kb on + strand, within H281DRAFT_00608 at 682.547 kb on - strand, within H281DRAFT_00608 at 682.547 kb on - strand, within H281DRAFT_00608 at 682.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 679,299 + +0.6 679,503 + -1.0 679,504 - -0.2 679,504 - -1.0 679,788 + H281DRAFT_00606 0.42 +0.4 679,788 + H281DRAFT_00606 0.42 -0.2 679,788 + H281DRAFT_00606 0.42 -0.8 679,789 - H281DRAFT_00606 0.42 -0.7 679,789 - H281DRAFT_00606 0.42 -0.3 680,016 + H281DRAFT_00606 0.73 +1.0 680,029 + H281DRAFT_00606 0.75 +0.2 680,118 - H281DRAFT_00606 0.87 +0.5 680,861 - H281DRAFT_00607 0.44 +1.2 681,611 - +0.1 681,611 - -0.1 681,871 - -0.6 681,871 - -1.8 681,912 + -1.4 681,915 + -0.8 682,074 + H281DRAFT_00608 0.14 +0.4 682,075 - H281DRAFT_00608 0.14 -2.9 682,111 + H281DRAFT_00608 0.16 -0.2 682,225 - H281DRAFT_00608 0.20 -1.2 682,354 - H281DRAFT_00608 0.25 -0.6 682,546 + H281DRAFT_00608 0.33 -3.3 682,546 + H281DRAFT_00608 0.33 -0.6 682,547 - H281DRAFT_00608 0.33 -0.5 682,547 - H281DRAFT_00608 0.33 -1.7 682,547 - -0.2
Or see this region's nucleotide sequence