Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00471

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00470 and H281DRAFT_00471 are separated by 96 nucleotidesH281DRAFT_00471 and H281DRAFT_00472 are separated by 179 nucleotidesH281DRAFT_00472 and H281DRAFT_00473 are separated by 10 nucleotides H281DRAFT_00470: H281DRAFT_00470 - murein-DD-endopeptidase. Serine peptidase. MEROPS family S11, at 529,313 to 530,494 _00470 H281DRAFT_00471: H281DRAFT_00471 - transcriptional regulator, IclR family, at 530,591 to 531,403 _00471 H281DRAFT_00472: H281DRAFT_00472 - L-lactate dehydrogenase complex protein LldE, at 531,583 to 532,305 _00472 H281DRAFT_00473: H281DRAFT_00473 - iron-sulfur cluster-binding protein, at 532,316 to 533,731 _00473 Position (kb) 530 531 532Strain fitness (log2 ratio) -2 -1 0 1 2at 529.610 kb on + strand, within H281DRAFT_00470at 529.610 kb on + strand, within H281DRAFT_00470at 529.610 kb on + strand, within H281DRAFT_00470at 529.610 kb on + strand, within H281DRAFT_00470at 529.611 kb on - strand, within H281DRAFT_00470at 529.611 kb on - strand, within H281DRAFT_00470at 529.612 kb on + strand, within H281DRAFT_00470at 529.612 kb on + strand, within H281DRAFT_00470at 529.612 kb on + strand, within H281DRAFT_00470at 529.613 kb on - strand, within H281DRAFT_00470at 529.655 kb on + strand, within H281DRAFT_00470at 529.655 kb on + strand, within H281DRAFT_00470at 529.656 kb on - strand, within H281DRAFT_00470at 529.740 kb on - strand, within H281DRAFT_00470at 530.165 kb on + strand, within H281DRAFT_00470at 530.165 kb on + strand, within H281DRAFT_00470at 530.166 kb on - strand, within H281DRAFT_00470at 530.207 kb on + strand, within H281DRAFT_00470at 530.207 kb on + strandat 530.207 kb on + strand, within H281DRAFT_00470at 530.208 kb on - strand, within H281DRAFT_00470at 530.217 kb on - strand, within H281DRAFT_00470at 530.240 kb on + strand, within H281DRAFT_00470at 530.251 kb on + strand, within H281DRAFT_00470at 530.251 kb on + strand, within H281DRAFT_00470at 530.393 kb on + strandat 530.618 kb on - strandat 530.764 kb on - strand, within H281DRAFT_00471at 530.764 kb on - strand, within H281DRAFT_00471at 530.764 kb on - strand, within H281DRAFT_00471at 530.764 kb on - strand, within H281DRAFT_00471at 530.765 kb on + strand, within H281DRAFT_00471at 530.766 kb on - strand, within H281DRAFT_00471at 530.766 kb on - strand, within H281DRAFT_00471at 530.766 kb on - strand, within H281DRAFT_00471at 530.768 kb on - strand, within H281DRAFT_00471at 531.320 kb on - strand, within H281DRAFT_00471at 531.446 kb on - strandat 531.513 kb on - strandat 531.513 kb on - strandat 531.513 kb on - strandat 531.531 kb on + strandat 531.531 kb on + strandat 531.552 kb on + strandat 531.683 kb on + strand, within H281DRAFT_00472at 531.684 kb on - strand, within H281DRAFT_00472at 531.721 kb on + strand, within H281DRAFT_00472at 531.722 kb on - strand, within H281DRAFT_00472at 531.793 kb on + strand, within H281DRAFT_00472at 531.793 kb on + strand, within H281DRAFT_00472at 531.794 kb on - strand, within H281DRAFT_00472at 531.983 kb on - strand, within H281DRAFT_00472at 532.123 kb on + strand, within H281DRAFT_00472at 532.200 kb on - strand, within H281DRAFT_00472at 532.224 kb on + strand, within H281DRAFT_00472at 532.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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529,610 + H281DRAFT_00470 0.25 -0.0
529,610 + H281DRAFT_00470 0.25 +0.4
529,610 + H281DRAFT_00470 0.25 -0.9
529,610 + H281DRAFT_00470 0.25 +2.3
529,611 - H281DRAFT_00470 0.25 +0.1
529,611 - H281DRAFT_00470 0.25 +1.0
529,612 + H281DRAFT_00470 0.25 +0.6
529,612 + H281DRAFT_00470 0.25 +0.6
529,612 + H281DRAFT_00470 0.25 +0.4
529,613 - H281DRAFT_00470 0.25 +0.8
529,655 + H281DRAFT_00470 0.29 +1.1
529,655 + H281DRAFT_00470 0.29 +0.6
529,656 - H281DRAFT_00470 0.29 +2.4
529,740 - H281DRAFT_00470 0.36 +0.9
530,165 + H281DRAFT_00470 0.72 +1.0
530,165 + H281DRAFT_00470 0.72 +1.2
530,166 - H281DRAFT_00470 0.72 +0.7
530,207 + H281DRAFT_00470 0.76 +0.6
530,207 + -1.0
530,207 + H281DRAFT_00470 0.76 +0.2
530,208 - H281DRAFT_00470 0.76 +2.2
530,217 - H281DRAFT_00470 0.76 -0.6
530,240 + H281DRAFT_00470 0.78 +0.3
530,251 + H281DRAFT_00470 0.79 +0.9
530,251 + H281DRAFT_00470 0.79 +0.4
530,393 + -0.2
530,618 - +0.1
530,764 - H281DRAFT_00471 0.21 -1.6
530,764 - H281DRAFT_00471 0.21 +0.6
530,764 - H281DRAFT_00471 0.21 -0.9
530,764 - H281DRAFT_00471 0.21 -1.4
530,765 + H281DRAFT_00471 0.21 -2.1
530,766 - H281DRAFT_00471 0.22 -1.6
530,766 - H281DRAFT_00471 0.22 -1.4
530,766 - H281DRAFT_00471 0.22 +0.7
530,768 - H281DRAFT_00471 0.22 -1.2
531,320 - H281DRAFT_00471 0.90 -1.0
531,446 - -0.3
531,513 - +0.2
531,513 - +0.8
531,513 - -0.1
531,531 + +0.4
531,531 + -0.2
531,552 + +0.0
531,683 + H281DRAFT_00472 0.14 -0.1
531,684 - H281DRAFT_00472 0.14 -0.2
531,721 + H281DRAFT_00472 0.19 +0.8
531,722 - H281DRAFT_00472 0.19 -0.9
531,793 + H281DRAFT_00472 0.29 +0.4
531,793 + H281DRAFT_00472 0.29 -0.4
531,794 - H281DRAFT_00472 0.29 +0.8
531,983 - H281DRAFT_00472 0.55 +0.3
532,123 + H281DRAFT_00472 0.75 +0.0
532,200 - H281DRAFT_00472 0.85 +0.5
532,224 + H281DRAFT_00472 0.89 -0.3
532,304 - +0.5

Or see this region's nucleotide sequence