Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00359

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00358 and H281DRAFT_00359 are separated by 167 nucleotidesH281DRAFT_00359 and H281DRAFT_00360 are separated by 12 nucleotides H281DRAFT_00358: H281DRAFT_00358 - Aldo/keto reductase, at 391,299 to 392,237 _00358 H281DRAFT_00359: H281DRAFT_00359 - Acyl-CoA dehydrogenase, at 392,405 to 393,535 _00359 H281DRAFT_00360: H281DRAFT_00360 - hypothetical protein, at 393,548 to 394,756 _00360 Position (kb) 392 393 394Strain fitness (log2 ratio) -1 0 1 2at 391.719 kb on + strand, within H281DRAFT_00358at 391.719 kb on + strand, within H281DRAFT_00358at 391.720 kb on - strand, within H281DRAFT_00358at 391.720 kb on - strand, within H281DRAFT_00358at 391.795 kb on + strand, within H281DRAFT_00358at 392.522 kb on + strand, within H281DRAFT_00359at 393.262 kb on + strand, within H281DRAFT_00359at 393.466 kb on - strandat 394.009 kb on + strand, within H281DRAFT_00360at 394.038 kb on + strand, within H281DRAFT_00360at 394.104 kb on - strand, within H281DRAFT_00360at 394.149 kb on - strand, within H281DRAFT_00360at 394.294 kb on - strand, within H281DRAFT_00360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
391,719 + H281DRAFT_00358 0.45 -0.4
391,719 + H281DRAFT_00358 0.45 +2.4
391,720 - H281DRAFT_00358 0.45 +0.4
391,720 - H281DRAFT_00358 0.45 -1.2
391,795 + H281DRAFT_00358 0.53 -0.4
392,522 + H281DRAFT_00359 0.10 -0.1
393,262 + H281DRAFT_00359 0.76 -0.9
393,466 - +0.7
394,009 + H281DRAFT_00360 0.38 -0.1
394,038 + H281DRAFT_00360 0.41 -0.7
394,104 - H281DRAFT_00360 0.46 +0.2
394,149 - H281DRAFT_00360 0.50 +0.0
394,294 - H281DRAFT_00360 0.62 -0.6

Or see this region's nucleotide sequence