Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00189

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00188 and H281DRAFT_00189 are separated by 209 nucleotidesH281DRAFT_00189 and H281DRAFT_00190 are separated by 534 nucleotidesH281DRAFT_00190 and H281DRAFT_00191 are separated by 45 nucleotides H281DRAFT_00188: H281DRAFT_00188 - H+/Cl- antiporter ClcA, at 201,753 to 203,270 _00188 H281DRAFT_00189: H281DRAFT_00189 - heptosyltransferase-1, at 203,480 to 204,481 _00189 H281DRAFT_00190: H281DRAFT_00190 - hypothetical protein, at 205,016 to 205,153 _00190 H281DRAFT_00191: H281DRAFT_00191 - hypothetical protein, at 205,199 to 205,378 _00191 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 202.530 kb on - strand, within H281DRAFT_00188at 202.609 kb on + strand, within H281DRAFT_00188at 202.609 kb on + strand, within H281DRAFT_00188at 202.610 kb on - strand, within H281DRAFT_00188at 202.613 kb on + strand, within H281DRAFT_00188at 202.613 kb on + strand, within H281DRAFT_00188at 202.613 kb on + strand, within H281DRAFT_00188at 202.613 kb on + strand, within H281DRAFT_00188at 202.613 kb on + strand, within H281DRAFT_00188at 202.614 kb on - strand, within H281DRAFT_00188at 202.614 kb on - strand, within H281DRAFT_00188at 202.615 kb on + strand, within H281DRAFT_00188at 202.615 kb on + strand, within H281DRAFT_00188at 202.615 kb on + strand, within H281DRAFT_00188at 202.615 kb on + strand, within H281DRAFT_00188at 202.615 kb on + strand, within H281DRAFT_00188at 202.615 kb on + strandat 202.616 kb on - strand, within H281DRAFT_00188at 202.616 kb on - strand, within H281DRAFT_00188at 202.616 kb on - strand, within H281DRAFT_00188at 202.616 kb on - strand, within H281DRAFT_00188at 202.616 kb on - strand, within H281DRAFT_00188at 202.616 kb on - strand, within H281DRAFT_00188at 202.743 kb on - strand, within H281DRAFT_00188at 202.819 kb on + strand, within H281DRAFT_00188at 202.820 kb on - strand, within H281DRAFT_00188at 202.820 kb on - strand, within H281DRAFT_00188at 202.886 kb on + strand, within H281DRAFT_00188at 203.050 kb on - strand, within H281DRAFT_00188at 203.204 kb on - strandat 203.297 kb on + strandat 203.297 kb on + strandat 203.298 kb on - strandat 203.298 kb on - strandat 203.298 kb on - strandat 203.299 kb on + strandat 203.299 kb on + strandat 203.300 kb on - strandat 203.300 kb on - strandat 203.300 kb on - strandat 203.317 kb on + strandat 203.733 kb on - strand, within H281DRAFT_00189at 203.745 kb on - strand, within H281DRAFT_00189at 203.768 kb on + strand, within H281DRAFT_00189at 203.861 kb on + strand, within H281DRAFT_00189at 203.964 kb on - strand, within H281DRAFT_00189at 204.432 kb on + strandat 204.539 kb on + strandat 204.540 kb on - strandat 204.571 kb on + strandat 204.572 kb on - strandat 204.572 kb on - strandat 204.659 kb on + strandat 204.659 kb on + strandat 204.660 kb on - strandat 204.721 kb on + strandat 204.721 kb on + strandat 204.722 kb on - strandat 204.722 kb on - strandat 204.791 kb on + strandat 204.792 kb on - strandat 204.792 kb on - strandat 204.831 kb on + strandat 204.832 kb on - strandat 204.832 kb on - strandat 204.833 kb on + strandat 204.929 kb on - strandat 204.954 kb on + strandat 204.954 kb on + strandat 204.954 kb on + strandat 204.955 kb on - strandat 204.955 kb on - strandat 205.054 kb on - strand, within H281DRAFT_00190at 205.101 kb on - strand, within H281DRAFT_00190at 205.104 kb on - strand, within H281DRAFT_00190at 205.106 kb on + strand, within H281DRAFT_00190at 205.124 kb on + strand, within H281DRAFT_00190at 205.124 kb on + strand, within H281DRAFT_00190at 205.124 kb on + strand, within H281DRAFT_00190at 205.125 kb on - strand, within H281DRAFT_00190at 205.125 kb on - strand, within H281DRAFT_00190at 205.125 kb on - strand, within H281DRAFT_00190at 205.125 kb on - strand, within H281DRAFT_00190at 205.143 kb on - strandat 205.143 kb on - strandat 205.143 kb on - strandat 205.143 kb on - strandat 205.143 kb on - strandat 205.146 kb on - strandat 205.146 kb on - strandat 205.152 kb on - strandat 205.234 kb on + strand, within H281DRAFT_00191at 205.364 kb on + strandat 205.364 kb on + strandat 205.365 kb on - strandat 205.365 kb on - strandat 205.365 kb on - strandat 205.365 kb on - strandat 205.365 kb on - strandat 205.399 kb on + strandat 205.418 kb on + strandat 205.419 kb on - strandat 205.420 kb on + strandat 205.420 kb on + strandat 205.420 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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202,530 - H281DRAFT_00188 0.51 +0.3
202,609 + H281DRAFT_00188 0.56 -0.9
202,609 + H281DRAFT_00188 0.56 +0.1
202,610 - H281DRAFT_00188 0.56 +0.5
202,613 + H281DRAFT_00188 0.57 -0.6
202,613 + H281DRAFT_00188 0.57 +0.4
202,613 + H281DRAFT_00188 0.57 +0.1
202,613 + H281DRAFT_00188 0.57 -0.6
202,613 + H281DRAFT_00188 0.57 +1.1
202,614 - H281DRAFT_00188 0.57 +0.5
202,614 - H281DRAFT_00188 0.57 -0.1
202,615 + H281DRAFT_00188 0.57 +0.4
202,615 + H281DRAFT_00188 0.57 -0.5
202,615 + H281DRAFT_00188 0.57 -0.6
202,615 + H281DRAFT_00188 0.57 +0.2
202,615 + H281DRAFT_00188 0.57 -1.1
202,615 + +0.4
202,616 - H281DRAFT_00188 0.57 -1.3
202,616 - H281DRAFT_00188 0.57 -0.3
202,616 - H281DRAFT_00188 0.57 +0.2
202,616 - H281DRAFT_00188 0.57 +0.0
202,616 - H281DRAFT_00188 0.57 -0.9
202,616 - H281DRAFT_00188 0.57 -0.0
202,743 - H281DRAFT_00188 0.65 -0.1
202,819 + H281DRAFT_00188 0.70 -0.4
202,820 - H281DRAFT_00188 0.70 -0.1
202,820 - H281DRAFT_00188 0.70 -0.5
202,886 + H281DRAFT_00188 0.75 -0.4
203,050 - H281DRAFT_00188 0.85 -0.1
203,204 - -0.2
203,297 + +0.5
203,297 + +0.2
203,298 - -0.4
203,298 - -0.4
203,298 - -0.1
203,299 + +0.3
203,299 + -0.1
203,300 - -0.5
203,300 - -0.5
203,300 - -0.9
203,317 + +0.1
203,733 - H281DRAFT_00189 0.25 +1.1
203,745 - H281DRAFT_00189 0.26 +0.2
203,768 + H281DRAFT_00189 0.29 -0.4
203,861 + H281DRAFT_00189 0.38 -0.5
203,964 - H281DRAFT_00189 0.48 +0.6
204,432 + +0.4
204,539 + +0.8
204,540 - +3.5
204,571 + -0.5
204,572 - -0.6
204,572 - +0.4
204,659 + -0.3
204,659 + -1.5
204,660 - +0.5
204,721 + -0.4
204,721 + -0.6
204,722 - -0.2
204,722 - -0.4
204,791 + -0.5
204,792 - +0.0
204,792 - +0.2
204,831 + +0.2
204,832 - -1.4
204,832 - +0.8
204,833 + +0.1
204,929 - -0.8
204,954 + -0.2
204,954 + +0.6
204,954 + +0.1
204,955 - +0.3
204,955 - +0.6
205,054 - H281DRAFT_00190 0.28 -1.9
205,101 - H281DRAFT_00190 0.62 +0.8
205,104 - H281DRAFT_00190 0.64 -0.0
205,106 + H281DRAFT_00190 0.65 +0.2
205,124 + H281DRAFT_00190 0.78 +0.1
205,124 + H281DRAFT_00190 0.78 +0.3
205,124 + H281DRAFT_00190 0.78 +0.1
205,125 - H281DRAFT_00190 0.79 -1.0
205,125 - H281DRAFT_00190 0.79 +0.2
205,125 - H281DRAFT_00190 0.79 +0.3
205,125 - H281DRAFT_00190 0.79 +4.0
205,143 - -0.6
205,143 - -0.1
205,143 - +0.1
205,143 - +0.4
205,143 - -0.2
205,146 - -0.3
205,146 - -0.1
205,152 - -0.9
205,234 + H281DRAFT_00191 0.19 -0.5
205,364 + -0.3
205,364 + +0.9
205,365 - +0.9
205,365 - -0.1
205,365 - +0.4
205,365 - -0.9
205,365 - -0.3
205,399 + +0.4
205,418 + +2.1
205,419 - +0.6
205,420 + -0.3
205,420 + -0.1
205,420 + +0.5

Or see this region's nucleotide sequence