Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06409

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06408 and H281DRAFT_06409 are separated by 488 nucleotidesH281DRAFT_06409 and H281DRAFT_06410 are separated by 812 nucleotides H281DRAFT_06408: H281DRAFT_06408 - transcriptional regulator, LacI family, at 5,447 to 6,466 _06408 H281DRAFT_06409: H281DRAFT_06409 - Tetratricopeptide repeat-containing protein, at 6,955 to 7,488 _06409 H281DRAFT_06410: H281DRAFT_06410 - Ribosomal protein L11 methylase, at 8,301 to 9,245 _06410 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1at 5.982 kb on + strand, within H281DRAFT_06408at 5.982 kb on + strand, within H281DRAFT_06408at 5.982 kb on + strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 6.129 kb on - strand, within H281DRAFT_06408at 6.129 kb on - strand, within H281DRAFT_06408at 6.156 kb on - strand, within H281DRAFT_06408at 6.185 kb on + strand, within H281DRAFT_06408at 6.185 kb on + strand, within H281DRAFT_06408at 6.781 kb on - strandat 6.781 kb on - strandat 6.782 kb on + strandat 6.782 kb on + strandat 6.783 kb on - strandat 6.783 kb on - strandat 6.783 kb on - strandat 6.783 kb on - strandat 6.783 kb on - strandat 6.783 kb on - strandat 6.954 kb on + strandat 6.954 kb on + strandat 6.954 kb on + strandat 6.954 kb on + strandat 6.955 kb on - strandat 6.955 kb on - strandat 6.955 kb on - strandat 6.955 kb on - strandat 6.955 kb on - strandat 6.955 kb on - strandat 6.955 kb on - strandat 7.105 kb on + strand, within H281DRAFT_06409at 7.105 kb on + strand, within H281DRAFT_06409at 7.105 kb on + strand, within H281DRAFT_06409at 7.105 kb on + strand, within H281DRAFT_06409at 7.105 kb on + strand, within H281DRAFT_06409at 7.106 kb on - strand, within H281DRAFT_06409at 7.106 kb on - strand, within H281DRAFT_06409at 7.106 kb on - strand, within H281DRAFT_06409at 7.108 kb on - strand, within H281DRAFT_06409at 7.175 kb on + strand, within H281DRAFT_06409at 7.175 kb on + strand, within H281DRAFT_06409at 7.283 kb on + strand, within H281DRAFT_06409at 7.283 kb on + strand, within H281DRAFT_06409at 7.283 kb on + strand, within H281DRAFT_06409at 7.284 kb on - strand, within H281DRAFT_06409at 7.312 kb on - strand, within H281DRAFT_06409at 7.387 kb on + strand, within H281DRAFT_06409at 7.387 kb on + strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.432 kb on + strand, within H281DRAFT_06409at 7.432 kb on + strand, within H281DRAFT_06409at 7.432 kb on + strand, within H281DRAFT_06409at 7.432 kb on + strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strandat 7.433 kb on - strand, within H281DRAFT_06409at 7.556 kb on + strandat 7.556 kb on + strandat 7.556 kb on + strandat 7.557 kb on - strandat 7.557 kb on - strandat 7.557 kb on - strandat 7.557 kb on - strandat 7.567 kb on + strandat 7.568 kb on - strandat 7.568 kb on - strandat 7.584 kb on + strandat 7.585 kb on - strandat 7.605 kb on - strandat 7.650 kb on + strandat 7.679 kb on - strandat 7.709 kb on - strandat 7.839 kb on + strandat 7.839 kb on + strandat 7.839 kb on + strandat 7.840 kb on - strandat 7.840 kb on - strandat 7.840 kb on - strandat 7.952 kb on + strandat 7.952 kb on + strandat 7.952 kb on + strandat 7.952 kb on + strandat 7.952 kb on + strandat 7.953 kb on - strandat 7.953 kb on - strandat 7.953 kb on - strandat 8.014 kb on + strandat 8.014 kb on + strandat 8.014 kb on + strandat 8.015 kb on - strandat 8.015 kb on - strandat 8.015 kb on - strandat 8.095 kb on - strandat 8.107 kb on + strandat 8.108 kb on - strandat 8.108 kb on - strandat 8.145 kb on - strandat 8.217 kb on - strandat 8.269 kb on - strandat 8.316 kb on + strandat 8.344 kb on + strandat 8.362 kb on + strandat 8.402 kb on - strand, within H281DRAFT_06410at 8.449 kb on + strand, within H281DRAFT_06410at 8.449 kb on + strand, within H281DRAFT_06410at 8.459 kb on + strand, within H281DRAFT_06410

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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5,982 + H281DRAFT_06408 0.52 -0.9
5,982 + H281DRAFT_06408 0.52 -0.0
5,982 + H281DRAFT_06408 0.52 -1.5
5,983 - H281DRAFT_06408 0.53 +0.0
5,983 - H281DRAFT_06408 0.53 +0.8
5,983 - H281DRAFT_06408 0.53 -0.1
5,983 - H281DRAFT_06408 0.53 +0.6
5,983 - H281DRAFT_06408 0.53 +0.1
5,983 - H281DRAFT_06408 0.53 +1.2
6,129 - H281DRAFT_06408 0.67 +0.8
6,129 - H281DRAFT_06408 0.67 +0.6
6,156 - H281DRAFT_06408 0.70 -1.1
6,185 + H281DRAFT_06408 0.72 -0.1
6,185 + H281DRAFT_06408 0.72 +0.3
6,781 - -0.4
6,781 - +1.6
6,782 + +0.2
6,782 + -1.3
6,783 - -0.6
6,783 - +0.0
6,783 - +0.4
6,783 - +0.3
6,783 - -0.4
6,783 - +0.4
6,954 + +0.0
6,954 + +0.4
6,954 + +0.2
6,954 + -0.1
6,955 - +0.5
6,955 - -0.5
6,955 - +1.4
6,955 - +1.4
6,955 - +0.4
6,955 - -1.2
6,955 - -0.3
7,105 + H281DRAFT_06409 0.28 -0.4
7,105 + H281DRAFT_06409 0.28 -0.0
7,105 + H281DRAFT_06409 0.28 -0.1
7,105 + H281DRAFT_06409 0.28 +1.4
7,105 + H281DRAFT_06409 0.28 +0.4
7,106 - H281DRAFT_06409 0.28 +0.9
7,106 - H281DRAFT_06409 0.28 -0.6
7,106 - H281DRAFT_06409 0.28 -0.1
7,108 - H281DRAFT_06409 0.29 +0.8
7,175 + H281DRAFT_06409 0.41 -0.2
7,175 + H281DRAFT_06409 0.41 +0.5
7,283 + H281DRAFT_06409 0.61 +0.3
7,283 + H281DRAFT_06409 0.61 -0.5
7,283 + H281DRAFT_06409 0.61 +0.7
7,284 - H281DRAFT_06409 0.62 +0.6
7,312 - H281DRAFT_06409 0.67 +0.1
7,387 + H281DRAFT_06409 0.81 +0.6
7,387 + H281DRAFT_06409 0.81 +0.4
7,388 - H281DRAFT_06409 0.81 +0.3
7,388 - H281DRAFT_06409 0.81 +0.4
7,388 - H281DRAFT_06409 0.81 -0.3
7,388 - H281DRAFT_06409 0.81 +0.2
7,388 - H281DRAFT_06409 0.81 +0.2
7,388 - H281DRAFT_06409 0.81 -0.1
7,432 + H281DRAFT_06409 0.89 +0.2
7,432 + H281DRAFT_06409 0.89 -0.3
7,432 + H281DRAFT_06409 0.89 -0.0
7,432 + H281DRAFT_06409 0.89 +0.5
7,433 - H281DRAFT_06409 0.90 -0.6
7,433 - H281DRAFT_06409 0.90 +0.1
7,433 - H281DRAFT_06409 0.90 +0.7
7,433 - H281DRAFT_06409 0.90 -0.2
7,433 - H281DRAFT_06409 0.90 +0.5
7,433 - H281DRAFT_06409 0.90 +0.0
7,433 - H281DRAFT_06409 0.90 -0.2
7,433 - H281DRAFT_06409 0.90 +0.5
7,433 - H281DRAFT_06409 0.90 +0.8
7,433 - H281DRAFT_06409 0.90 +0.1
7,433 - H281DRAFT_06409 0.90 +0.3
7,433 - H281DRAFT_06409 0.90 +0.2
7,433 - +1.0
7,433 - H281DRAFT_06409 0.90 +0.3
7,556 + +0.5
7,556 + +0.4
7,556 + +0.2
7,557 - -0.1
7,557 - -0.5
7,557 - +0.8
7,557 - +0.1
7,567 + -0.6
7,568 - +0.0
7,568 - +0.6
7,584 + -1.7
7,585 - -1.6
7,605 - -2.5
7,650 + -0.4
7,679 - +0.1
7,709 - +0.1
7,839 + +0.3
7,839 + +0.4
7,839 + -0.2
7,840 - +0.6
7,840 - +0.3
7,840 - +0.2
7,952 + +0.4
7,952 + -1.0
7,952 + +0.1
7,952 + +0.1
7,952 + -0.5
7,953 - -0.4
7,953 - +0.6
7,953 - +0.3
8,014 + +0.1
8,014 + +0.3
8,014 + +0.1
8,015 - -0.6
8,015 - +0.6
8,015 - +0.6
8,095 - -0.3
8,107 + +1.1
8,108 - -0.1
8,108 - -0.4
8,145 - +0.3
8,217 - -0.3
8,269 - -1.4
8,316 + +0.1
8,344 + -0.6
8,362 + +1.4
8,402 - H281DRAFT_06410 0.11 -0.3
8,449 + H281DRAFT_06410 0.16 -0.3
8,449 + H281DRAFT_06410 0.16 -1.0
8,459 + H281DRAFT_06410 0.17 +0.2

Or see this region's nucleotide sequence