Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06389 and H281DRAFT_06390 are separated by 92 nucleotides H281DRAFT_06390 and H281DRAFT_06391 overlap by 10 nucleotides H281DRAFT_06391 and H281DRAFT_06392 overlap by 1 nucleotides H281DRAFT_06392 and H281DRAFT_06393 overlap by 4 nucleotides
H281DRAFT_06389: H281DRAFT_06389 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 61,646 to 62,536
_06389
H281DRAFT_06390: H281DRAFT_06390 - tRNA_Val_GAC, at 62,629 to 62,705
_06390
H281DRAFT_06391: H281DRAFT_06391 - hypothetical protein, at 62,696 to 62,788
_06391
H281DRAFT_06392: H281DRAFT_06392 - Microcystin degradation protein MlrC, contains DUF1485 domain, at 62,788 to 64,287
_06392
H281DRAFT_06393: H281DRAFT_06393 - N-carbamoyl-L-amino-acid hydrolase, at 64,284 to 65,582
_06393
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -1
0
1 at 61.831 kb on + strand, within H281DRAFT_06389 at 61.831 kb on + strand, within H281DRAFT_06389 at 61.872 kb on + strand, within H281DRAFT_06389 at 61.872 kb on + strand, within H281DRAFT_06389 at 61.873 kb on - strand, within H281DRAFT_06389 at 61.951 kb on + strand, within H281DRAFT_06389 at 61.952 kb on - strand, within H281DRAFT_06389 at 62.258 kb on - strand, within H281DRAFT_06389 at 62.360 kb on + strand, within H281DRAFT_06389 at 62.361 kb on - strand, within H281DRAFT_06389 at 62.361 kb on - strand, within H281DRAFT_06389 at 62.379 kb on - strand, within H281DRAFT_06389 at 62.466 kb on - strand at 62.563 kb on - strand at 62.790 kb on - strand at 62.790 kb on - strand at 62.939 kb on + strand, within H281DRAFT_06392 at 62.940 kb on - strand, within H281DRAFT_06392 at 63.061 kb on - strand, within H281DRAFT_06392 at 63.104 kb on + strand, within H281DRAFT_06392 at 63.105 kb on - strand, within H281DRAFT_06392 at 63.125 kb on + strand, within H281DRAFT_06392 at 63.125 kb on + strand at 63.559 kb on - strand, within H281DRAFT_06392 at 63.745 kb on + strand, within H281DRAFT_06392 at 63.745 kb on + strand, within H281DRAFT_06392 at 63.789 kb on - strand, within H281DRAFT_06392 at 63.792 kb on + strand, within H281DRAFT_06392 at 63.792 kb on + strand at 63.792 kb on + strand, within H281DRAFT_06392 at 63.793 kb on - strand, within H281DRAFT_06392 at 63.807 kb on - strand, within H281DRAFT_06392 at 63.980 kb on - strand, within H281DRAFT_06392 at 64.288 kb on - strand at 64.469 kb on - strand, within H281DRAFT_06393 at 64.761 kb on + strand, within H281DRAFT_06393 at 65.035 kb on + strand, within H281DRAFT_06393 at 65.208 kb on - strand, within H281DRAFT_06393
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 61,831 + H281DRAFT_06389 0.21 -0.3 61,831 + H281DRAFT_06389 0.21 +0.2 61,872 + H281DRAFT_06389 0.25 +1.1 61,872 + H281DRAFT_06389 0.25 +0.8 61,873 - H281DRAFT_06389 0.25 +0.2 61,951 + H281DRAFT_06389 0.34 +0.9 61,952 - H281DRAFT_06389 0.34 -0.2 62,258 - H281DRAFT_06389 0.69 -1.3 62,360 + H281DRAFT_06389 0.80 +0.8 62,361 - H281DRAFT_06389 0.80 -1.7 62,361 - H281DRAFT_06389 0.80 -0.3 62,379 - H281DRAFT_06389 0.82 +0.1 62,466 - -0.6 62,563 - +0.0 62,790 - +0.5 62,790 - +0.0 62,939 + H281DRAFT_06392 0.10 -0.4 62,940 - H281DRAFT_06392 0.10 +1.1 63,061 - H281DRAFT_06392 0.18 -0.0 63,104 + H281DRAFT_06392 0.21 +1.0 63,105 - H281DRAFT_06392 0.21 -0.3 63,125 + H281DRAFT_06392 0.22 +0.6 63,125 + -1.7 63,559 - H281DRAFT_06392 0.51 -0.1 63,745 + H281DRAFT_06392 0.64 +0.5 63,745 + H281DRAFT_06392 0.64 +0.9 63,789 - H281DRAFT_06392 0.67 +0.7 63,792 + H281DRAFT_06392 0.67 -0.6 63,792 + -1.1 63,792 + H281DRAFT_06392 0.67 -0.1 63,793 - H281DRAFT_06392 0.67 +0.9 63,807 - H281DRAFT_06392 0.68 +0.2 63,980 - H281DRAFT_06392 0.79 +0.9 64,288 - -0.1 64,469 - H281DRAFT_06393 0.14 +0.6 64,761 + H281DRAFT_06393 0.37 +1.6 65,035 + H281DRAFT_06393 0.58 -1.4 65,208 - H281DRAFT_06393 0.71 -0.3
Or see this region's nucleotide sequence