Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05921 and H281DRAFT_05922 are separated by 130 nucleotides H281DRAFT_05922 and H281DRAFT_05923 are separated by 388 nucleotides
H281DRAFT_05921: H281DRAFT_05921 - Sugar phosphate permease, at 54,638 to 55,990
_05921
H281DRAFT_05922: H281DRAFT_05922 - hypothetical protein, at 56,121 to 56,456
_05922
H281DRAFT_05923: H281DRAFT_05923 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 56,845 to 57,630
_05923
Position (kb) 56
57 Strain fitness (log2 ratio) -1
0
1
2
3 at 55.262 kb on - strand, within H281DRAFT_05921 at 55.898 kb on + strand at 55.899 kb on - strand at 56.111 kb on + strand at 56.190 kb on - strand, within H281DRAFT_05922 at 56.296 kb on - strand, within H281DRAFT_05922 at 56.583 kb on + strand at 56.583 kb on + strand at 56.675 kb on + strand at 56.881 kb on - strand at 56.909 kb on + strand at 56.910 kb on - strand at 56.992 kb on - strand, within H281DRAFT_05923 at 57.176 kb on + strand, within H281DRAFT_05923 at 57.176 kb on + strand, within H281DRAFT_05923 at 57.177 kb on - strand, within H281DRAFT_05923 at 57.177 kb on - strand, within H281DRAFT_05923 at 57.243 kb on + strand, within H281DRAFT_05923
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 55,262 - H281DRAFT_05921 0.46 -0.0 55,898 + +0.6 55,899 - -1.0 56,111 + -0.2 56,190 - H281DRAFT_05922 0.21 +0.9 56,296 - H281DRAFT_05922 0.52 +0.2 56,583 + +0.8 56,583 + +0.2 56,675 + +3.0 56,881 - -1.5 56,909 + -0.1 56,910 - -0.4 56,992 - H281DRAFT_05923 0.19 +0.4 57,176 + H281DRAFT_05923 0.42 -0.3 57,176 + H281DRAFT_05923 0.42 +0.4 57,177 - H281DRAFT_05923 0.42 +0.0 57,177 - H281DRAFT_05923 0.42 -0.2 57,243 + H281DRAFT_05923 0.51 -0.5
Or see this region's nucleotide sequence