Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05432

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05431 and H281DRAFT_05432 overlap by 8 nucleotidesH281DRAFT_05432 and H281DRAFT_05433 are separated by 73 nucleotides H281DRAFT_05431: H281DRAFT_05431 - amino acid/amide ABC transporter membrane protein 2, HAAT family /amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 6,731 to 8,593 _05431 H281DRAFT_05432: H281DRAFT_05432 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 8,586 to 9,419 _05432 H281DRAFT_05433: H281DRAFT_05433 - amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-), at 9,493 to 10,656 _05433 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1 2at 7.646 kb on + strand, within H281DRAFT_05431at 7.646 kb on + strand, within H281DRAFT_05431at 7.991 kb on + strand, within H281DRAFT_05431at 8.010 kb on - strand, within H281DRAFT_05431at 8.074 kb on - strand, within H281DRAFT_05431at 8.375 kb on - strand, within H281DRAFT_05431at 8.378 kb on + strand, within H281DRAFT_05431at 8.434 kb on - strandat 8.823 kb on + strandat 8.823 kb on + strand, within H281DRAFT_05432at 8.824 kb on - strand, within H281DRAFT_05432at 8.979 kb on - strand, within H281DRAFT_05432at 9.257 kb on + strand, within H281DRAFT_05432at 9.258 kb on - strand, within H281DRAFT_05432at 9.258 kb on - strand, within H281DRAFT_05432at 9.289 kb on + strand, within H281DRAFT_05432at 9.338 kb on + strandat 9.357 kb on + strandat 9.358 kb on - strandat 9.374 kb on + strandat 9.374 kb on + strandat 9.454 kb on - strandat 9.454 kb on - strandat 9.717 kb on - strand, within H281DRAFT_05433at 9.839 kb on + strand, within H281DRAFT_05433at 9.854 kb on + strand, within H281DRAFT_05433at 9.854 kb on + strand, within H281DRAFT_05433at 9.855 kb on - strand, within H281DRAFT_05433at 9.918 kb on - strand, within H281DRAFT_05433at 10.064 kb on + strand, within H281DRAFT_05433at 10.064 kb on + strand, within H281DRAFT_05433at 10.125 kb on + strand, within H281DRAFT_05433at 10.161 kb on - strand, within H281DRAFT_05433at 10.161 kb on - strand, within H281DRAFT_05433at 10.241 kb on + strand, within H281DRAFT_05433at 10.241 kb on + strand, within H281DRAFT_05433at 10.271 kb on + strand, within H281DRAFT_05433at 10.282 kb on - strand, within H281DRAFT_05433at 10.282 kb on - strand, within H281DRAFT_05433at 10.283 kb on + strand, within H281DRAFT_05433at 10.284 kb on - strand, within H281DRAFT_05433at 10.287 kb on + strand, within H281DRAFT_05433at 10.287 kb on + strand, within H281DRAFT_05433at 10.287 kb on + strand, within H281DRAFT_05433

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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7,646 + H281DRAFT_05431 0.49 +0.4
7,646 + H281DRAFT_05431 0.49 +0.7
7,991 + H281DRAFT_05431 0.68 -0.8
8,010 - H281DRAFT_05431 0.69 +0.6
8,074 - H281DRAFT_05431 0.72 +0.4
8,375 - H281DRAFT_05431 0.88 +0.3
8,378 + H281DRAFT_05431 0.88 -0.0
8,434 - +0.2
8,823 + +0.4
8,823 + H281DRAFT_05432 0.28 +0.3
8,824 - H281DRAFT_05432 0.29 -0.3
8,979 - H281DRAFT_05432 0.47 -0.2
9,257 + H281DRAFT_05432 0.80 +0.4
9,258 - H281DRAFT_05432 0.81 -0.9
9,258 - H281DRAFT_05432 0.81 +0.1
9,289 + H281DRAFT_05432 0.84 +2.5
9,338 + -0.7
9,357 + +2.0
9,358 - +0.4
9,374 + +0.5
9,374 + -0.1
9,454 - +0.4
9,454 - +0.4
9,717 - H281DRAFT_05433 0.19 +0.6
9,839 + H281DRAFT_05433 0.30 +0.9
9,854 + H281DRAFT_05433 0.31 +0.5
9,854 + H281DRAFT_05433 0.31 -0.5
9,855 - H281DRAFT_05433 0.31 +0.1
9,918 - H281DRAFT_05433 0.37 -0.6
10,064 + H281DRAFT_05433 0.49 -0.3
10,064 + H281DRAFT_05433 0.49 +0.9
10,125 + H281DRAFT_05433 0.54 -0.1
10,161 - H281DRAFT_05433 0.57 -0.9
10,161 - H281DRAFT_05433 0.57 +0.1
10,241 + H281DRAFT_05433 0.64 -0.8
10,241 + H281DRAFT_05433 0.64 +0.1
10,271 + H281DRAFT_05433 0.67 +0.1
10,282 - H281DRAFT_05433 0.68 -0.8
10,282 - H281DRAFT_05433 0.68 -0.7
10,283 + H281DRAFT_05433 0.68 +0.8
10,284 - H281DRAFT_05433 0.68 +1.0
10,287 + H281DRAFT_05433 0.68 -0.1
10,287 + H281DRAFT_05433 0.68 +0.4
10,287 + H281DRAFT_05433 0.68 -0.2

Or see this region's nucleotide sequence