Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04995

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04993 and H281DRAFT_04994 are separated by 8 nucleotidesH281DRAFT_04994 and H281DRAFT_04995 are separated by 166 nucleotidesH281DRAFT_04995 and H281DRAFT_04996 are separated by 107 nucleotides H281DRAFT_04993: H281DRAFT_04993 - hypothetical protein, at 179,532 to 179,849 _04993 H281DRAFT_04994: H281DRAFT_04994 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 179,858 to 180,340 _04994 H281DRAFT_04995: H281DRAFT_04995 - type III secretion protein HrpB1, at 180,507 to 180,938 _04995 H281DRAFT_04996: H281DRAFT_04996 - type III secretion protein C, at 181,046 to 182,830 _04996 Position (kb) 180 181Strain fitness (log2 ratio) -1 0 1at 179.680 kb on - strand, within H281DRAFT_04993at 180.672 kb on - strand, within H281DRAFT_04995at 180.672 kb on - strand, within H281DRAFT_04995at 181.096 kb on + strandat 181.097 kb on - strandat 181.378 kb on + strand, within H281DRAFT_04996at 181.833 kb on + strand, within H281DRAFT_04996

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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179,680 - H281DRAFT_04993 0.47 -0.3
180,672 - H281DRAFT_04995 0.38 -1.3
180,672 - H281DRAFT_04995 0.38 +0.3
181,096 + +0.4
181,097 - +0.0
181,378 + H281DRAFT_04996 0.19 +0.0
181,833 + H281DRAFT_04996 0.44 +0.1

Or see this region's nucleotide sequence