Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04894

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04893 and H281DRAFT_04894 are separated by 77 nucleotidesH281DRAFT_04894 and H281DRAFT_04895 are separated by 71 nucleotidesH281DRAFT_04895 and H281DRAFT_04896 are separated by 102 nucleotides H281DRAFT_04893: H281DRAFT_04893 - transcriptional regulator, LysR family, at 43,475 to 44,398 _04893 H281DRAFT_04894: H281DRAFT_04894 - inner membrane transporter RhtA, at 44,476 to 45,366 _04894 H281DRAFT_04895: H281DRAFT_04895 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 45,438 to 45,989 _04895 H281DRAFT_04896: H281DRAFT_04896 - transcriptional regulator, AraC family with amidase-like domain, at 46,092 to 47,087 _04896 Position (kb) 44 45 46Strain fitness (log2 ratio) -1 0 1at 43.962 kb on - strand, within H281DRAFT_04893at 43.962 kb on - strand, within H281DRAFT_04893at 44.406 kb on - strandat 44.419 kb on - strandat 44.711 kb on - strand, within H281DRAFT_04894at 44.797 kb on - strand, within H281DRAFT_04894at 44.999 kb on - strand, within H281DRAFT_04894at 45.170 kb on + strand, within H281DRAFT_04894at 45.297 kb on + strandat 45.461 kb on - strandat 45.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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43,962 - H281DRAFT_04893 0.53 +0.2
43,962 - H281DRAFT_04893 0.53 -0.3
44,406 - -0.6
44,419 - +1.5
44,711 - H281DRAFT_04894 0.26 -0.5
44,797 - H281DRAFT_04894 0.36 -1.6
44,999 - H281DRAFT_04894 0.59 +0.9
45,170 + H281DRAFT_04894 0.78 -0.1
45,297 + +0.6
45,461 - -0.5
45,463 - -0.4

Or see this region's nucleotide sequence