Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04813 and H281DRAFT_04814 are separated by 252 nucleotides H281DRAFT_04814 and H281DRAFT_04815 are separated by 10 nucleotides H281DRAFT_04815 and H281DRAFT_04816 overlap by 14 nucleotides
H281DRAFT_04813: H281DRAFT_04813 - hypothetical protein, at 248,194 to 249,603
_04813
H281DRAFT_04814: H281DRAFT_04814 - putative transcriptional regulator, at 249,856 to 250,434
_04814
H281DRAFT_04815: H281DRAFT_04815 - putative holliday junction resolvase, at 250,445 to 250,885
_04815
H281DRAFT_04816: H281DRAFT_04816 - pyrimidine operon attenuation protein / uracil phosphoribosyltransferase, at 250,872 to 251,411
_04816
Position (kb) 249
250
251 Strain fitness (log2 ratio) -1
0
1 at 248.906 kb on - strand, within H281DRAFT_04813 at 249.004 kb on + strand, within H281DRAFT_04813 at 249.005 kb on - strand, within H281DRAFT_04813 at 249.005 kb on - strand, within H281DRAFT_04813 at 249.061 kb on + strand, within H281DRAFT_04813 at 249.205 kb on + strand, within H281DRAFT_04813 at 249.206 kb on - strand, within H281DRAFT_04813 at 249.206 kb on - strand, within H281DRAFT_04813 at 249.206 kb on - strand, within H281DRAFT_04813 at 249.206 kb on - strand, within H281DRAFT_04813 at 249.206 kb on - strand, within H281DRAFT_04813 at 249.574 kb on - strand at 249.574 kb on - strand at 249.574 kb on - strand at 249.646 kb on + strand at 249.646 kb on + strand at 249.647 kb on - strand at 249.647 kb on - strand at 249.647 kb on - strand at 249.654 kb on + strand at 249.654 kb on + strand at 249.654 kb on + strand at 249.655 kb on - strand at 249.671 kb on - strand at 249.687 kb on + strand at 249.746 kb on - strand at 249.746 kb on - strand at 249.755 kb on + strand at 249.755 kb on + strand at 249.755 kb on + strand at 249.756 kb on - strand at 249.855 kb on + strand at 249.855 kb on + strand at 249.855 kb on + strand at 249.855 kb on + strand at 249.855 kb on + strand at 249.855 kb on + strand at 249.855 kb on + strand at 250.081 kb on + strand, within H281DRAFT_04814 at 250.147 kb on + strand, within H281DRAFT_04814 at 250.147 kb on + strand, within H281DRAFT_04814 at 250.147 kb on + strand, within H281DRAFT_04814 at 250.147 kb on + strand, within H281DRAFT_04814 at 250.147 kb on + strand, within H281DRAFT_04814 at 250.148 kb on - strand, within H281DRAFT_04814 at 250.149 kb on + strand, within H281DRAFT_04814 at 250.149 kb on + strand, within H281DRAFT_04814 at 250.149 kb on + strand, within H281DRAFT_04814 at 250.149 kb on + strand, within H281DRAFT_04814 at 250.149 kb on + strand, within H281DRAFT_04814 at 250.149 kb on + strand, within H281DRAFT_04814 at 250.149 kb on + strand, within H281DRAFT_04814 at 250.150 kb on - strand, within H281DRAFT_04814 at 250.852 kb on - strand at 250.852 kb on - strand at 250.852 kb on - strand at 250.992 kb on + strand, within H281DRAFT_04816 at 250.993 kb on - strand, within H281DRAFT_04816 at 250.993 kb on - strand, within H281DRAFT_04816 at 251.178 kb on + strand, within H281DRAFT_04816 at 251.178 kb on + strand, within H281DRAFT_04816 at 251.178 kb on + strand, within H281DRAFT_04816 at 251.179 kb on - strand, within H281DRAFT_04816 at 251.179 kb on - strand, within H281DRAFT_04816 at 251.217 kb on + strand, within H281DRAFT_04816 at 251.217 kb on + strand, within H281DRAFT_04816
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 248,906 - H281DRAFT_04813 0.50 -0.4 249,004 + H281DRAFT_04813 0.57 +0.7 249,005 - H281DRAFT_04813 0.58 +1.5 249,005 - H281DRAFT_04813 0.58 -0.0 249,061 + H281DRAFT_04813 0.61 +0.4 249,205 + H281DRAFT_04813 0.72 -0.4 249,206 - H281DRAFT_04813 0.72 -0.0 249,206 - H281DRAFT_04813 0.72 -0.4 249,206 - H281DRAFT_04813 0.72 -0.5 249,206 - H281DRAFT_04813 0.72 -0.1 249,206 - H281DRAFT_04813 0.72 -1.2 249,574 - +0.5 249,574 - +0.8 249,574 - -0.6 249,646 + +0.1 249,646 + +0.2 249,647 - +0.2 249,647 - -0.1 249,647 - +1.0 249,654 + +0.8 249,654 + +0.4 249,654 + +0.4 249,655 - +0.1 249,671 - -0.9 249,687 + +0.9 249,746 - -0.9 249,746 - +0.6 249,755 + +0.2 249,755 + +0.1 249,755 + +0.5 249,756 - -1.6 249,855 + +0.8 249,855 + +0.7 249,855 + +0.1 249,855 + +0.2 249,855 + -1.1 249,855 + -1.0 249,855 + -1.6 250,081 + H281DRAFT_04814 0.39 -0.3 250,147 + H281DRAFT_04814 0.50 -0.4 250,147 + H281DRAFT_04814 0.50 -0.9 250,147 + H281DRAFT_04814 0.50 -0.9 250,147 + H281DRAFT_04814 0.50 -0.3 250,147 + H281DRAFT_04814 0.50 -0.5 250,148 - H281DRAFT_04814 0.50 +0.4 250,149 + H281DRAFT_04814 0.51 -0.1 250,149 + H281DRAFT_04814 0.51 -0.2 250,149 + H281DRAFT_04814 0.51 +0.8 250,149 + H281DRAFT_04814 0.51 -0.5 250,149 + H281DRAFT_04814 0.51 -0.0 250,149 + H281DRAFT_04814 0.51 -0.3 250,149 + H281DRAFT_04814 0.51 -0.1 250,150 - H281DRAFT_04814 0.51 -0.6 250,852 - -1.0 250,852 - -0.2 250,852 - -0.1 250,992 + H281DRAFT_04816 0.22 -0.1 250,993 - H281DRAFT_04816 0.22 -0.8 250,993 - H281DRAFT_04816 0.22 -0.7 251,178 + H281DRAFT_04816 0.57 -0.2 251,178 + H281DRAFT_04816 0.57 -0.4 251,178 + H281DRAFT_04816 0.57 -1.2 251,179 - H281DRAFT_04816 0.57 -1.0 251,179 - H281DRAFT_04816 0.57 -0.8 251,217 + H281DRAFT_04816 0.64 -0.4 251,217 + H281DRAFT_04816 0.64 +1.4
Or see this region's nucleotide sequence