Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04357 and H281DRAFT_04358 are separated by 35 nucleotides H281DRAFT_04358 and H281DRAFT_04359 overlap by 4 nucleotides H281DRAFT_04359 and H281DRAFT_04360 are separated by 150 nucleotides
H281DRAFT_04357: H281DRAFT_04357 - sigma E regulatory protein, MucB/RseB, at 73,346 to 74,389
_04357
H281DRAFT_04358: H281DRAFT_04358 - serine protease Do, at 74,425 to 75,951
_04358
H281DRAFT_04359: H281DRAFT_04359 - Glutaredoxin and related proteins, at 75,948 to 76,211
_04359
H281DRAFT_04360: H281DRAFT_04360 - GTP-binding protein LepA, at 76,362 to 78,155
_04360
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 73.429 kb on + strand at 73.547 kb on + strand, within H281DRAFT_04357 at 73.589 kb on + strand, within H281DRAFT_04357 at 73.678 kb on + strand, within H281DRAFT_04357 at 73.678 kb on + strand, within H281DRAFT_04357 at 73.781 kb on + strand, within H281DRAFT_04357 at 73.781 kb on + strand, within H281DRAFT_04357 at 73.872 kb on - strand, within H281DRAFT_04357 at 74.012 kb on - strand, within H281DRAFT_04357 at 74.283 kb on + strand, within H281DRAFT_04357 at 74.283 kb on + strand, within H281DRAFT_04357 at 74.283 kb on + strand, within H281DRAFT_04357 at 74.283 kb on + strand, within H281DRAFT_04357 at 74.284 kb on - strand, within H281DRAFT_04357 at 74.284 kb on - strand, within H281DRAFT_04357 at 74.284 kb on - strand, within H281DRAFT_04357 at 74.286 kb on + strand at 74.315 kb on - strand at 74.367 kb on + strand at 74.367 kb on + strand at 74.368 kb on - strand at 74.368 kb on - strand at 74.372 kb on + strand at 74.372 kb on + strand at 74.372 kb on + strand at 74.373 kb on - strand at 74.373 kb on - strand at 74.388 kb on - strand at 74.842 kb on + strand, within H281DRAFT_04358 at 74.843 kb on - strand, within H281DRAFT_04358 at 74.887 kb on + strand, within H281DRAFT_04358 at 74.887 kb on + strand, within H281DRAFT_04358 at 74.887 kb on + strand, within H281DRAFT_04358 at 74.887 kb on + strand, within H281DRAFT_04358 at 74.888 kb on - strand, within H281DRAFT_04358 at 75.144 kb on - strand, within H281DRAFT_04358 at 75.197 kb on + strand, within H281DRAFT_04358 at 75.197 kb on + strand, within H281DRAFT_04358 at 75.220 kb on + strand, within H281DRAFT_04358 at 75.220 kb on + strand, within H281DRAFT_04358 at 75.220 kb on + strand, within H281DRAFT_04358 at 75.240 kb on + strand, within H281DRAFT_04358 at 75.241 kb on - strand, within H281DRAFT_04358 at 75.552 kb on + strand, within H281DRAFT_04358 at 75.552 kb on + strand, within H281DRAFT_04358 at 75.553 kb on - strand, within H281DRAFT_04358 at 76.055 kb on - strand, within H281DRAFT_04359 at 76.098 kb on + strand, within H281DRAFT_04359 at 76.099 kb on - strand, within H281DRAFT_04359 at 76.302 kb on + strand at 76.302 kb on + strand at 76.302 kb on + strand at 76.306 kb on + strand at 76.370 kb on + strand at 76.371 kb on - strand at 76.572 kb on + strand, within H281DRAFT_04360 at 76.572 kb on + strand, within H281DRAFT_04360 at 76.617 kb on + strand, within H281DRAFT_04360 at 76.711 kb on - strand, within H281DRAFT_04360 at 76.811 kb on - strand, within H281DRAFT_04360
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 73,429 + -0.9 73,547 + H281DRAFT_04357 0.19 -0.2 73,589 + H281DRAFT_04357 0.23 -0.2 73,678 + H281DRAFT_04357 0.32 +0.4 73,678 + H281DRAFT_04357 0.32 +0.2 73,781 + H281DRAFT_04357 0.42 -3.0 73,781 + H281DRAFT_04357 0.42 +0.7 73,872 - H281DRAFT_04357 0.50 -0.6 74,012 - H281DRAFT_04357 0.64 +0.4 74,283 + H281DRAFT_04357 0.90 +0.1 74,283 + H281DRAFT_04357 0.90 -0.5 74,283 + H281DRAFT_04357 0.90 -0.5 74,283 + H281DRAFT_04357 0.90 -0.3 74,284 - H281DRAFT_04357 0.90 +0.2 74,284 - H281DRAFT_04357 0.90 +2.4 74,284 - H281DRAFT_04357 0.90 -0.2 74,286 + +1.4 74,315 - +0.3 74,367 + +0.2 74,367 + -0.5 74,368 - -0.0 74,368 - +1.0 74,372 + -0.3 74,372 + -0.6 74,372 + +1.2 74,373 - -1.7 74,373 - -0.9 74,388 - -1.0 74,842 + H281DRAFT_04358 0.27 -0.7 74,843 - H281DRAFT_04358 0.27 -0.4 74,887 + H281DRAFT_04358 0.30 -1.4 74,887 + H281DRAFT_04358 0.30 -1.2 74,887 + H281DRAFT_04358 0.30 +0.1 74,887 + H281DRAFT_04358 0.30 -0.5 74,888 - H281DRAFT_04358 0.30 +0.2 75,144 - H281DRAFT_04358 0.47 -0.5 75,197 + H281DRAFT_04358 0.51 -0.4 75,197 + H281DRAFT_04358 0.51 +0.2 75,220 + H281DRAFT_04358 0.52 -0.8 75,220 + H281DRAFT_04358 0.52 +0.3 75,220 + H281DRAFT_04358 0.52 +1.0 75,240 + H281DRAFT_04358 0.53 -0.8 75,241 - H281DRAFT_04358 0.53 -0.9 75,552 + H281DRAFT_04358 0.74 +0.5 75,552 + H281DRAFT_04358 0.74 +0.1 75,553 - H281DRAFT_04358 0.74 -1.9 76,055 - H281DRAFT_04359 0.41 +0.8 76,098 + H281DRAFT_04359 0.57 +0.5 76,099 - H281DRAFT_04359 0.57 +0.5 76,302 + -0.6 76,302 + -0.9 76,302 + +0.3 76,306 + +0.1 76,370 + -1.7 76,371 - -0.2 76,572 + H281DRAFT_04360 0.12 -1.4 76,572 + H281DRAFT_04360 0.12 -0.5 76,617 + H281DRAFT_04360 0.14 -0.2 76,711 - H281DRAFT_04360 0.19 -0.2 76,811 - H281DRAFT_04360 0.25 -1.4
Or see this region's nucleotide sequence