Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04029 and H281DRAFT_04030 are separated by 368 nucleotides H281DRAFT_04030 and H281DRAFT_04031 are separated by 119 nucleotides H281DRAFT_04031 and H281DRAFT_04032 are separated by 77 nucleotides H281DRAFT_04032 and H281DRAFT_04033 are separated by 197 nucleotides
H281DRAFT_04029: H281DRAFT_04029 - hypothetical protein, at 132,261 to 132,575
_04029
H281DRAFT_04030: H281DRAFT_04030 - hypothetical protein, at 132,944 to 133,225
_04030
H281DRAFT_04031: H281DRAFT_04031 - Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains, at 133,345 to 134,286
_04031
H281DRAFT_04032: H281DRAFT_04032 - conserved hypothetical protein, at 134,364 to 134,684
_04032
H281DRAFT_04033: H281DRAFT_04033 - YggT family protein, at 134,882 to 135,445
_04033
Position (kb) 133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 132.367 kb on + strand, within H281DRAFT_04029 at 132.388 kb on + strand, within H281DRAFT_04029 at 132.413 kb on - strand at 132.416 kb on - strand, within H281DRAFT_04029 at 132.437 kb on - strand, within H281DRAFT_04029 at 132.451 kb on + strand, within H281DRAFT_04029 at 132.452 kb on - strand, within H281DRAFT_04029 at 132.461 kb on - strand, within H281DRAFT_04029 at 132.461 kb on - strand, within H281DRAFT_04029 at 132.537 kb on + strand, within H281DRAFT_04029 at 132.631 kb on + strand at 132.632 kb on - strand at 132.632 kb on - strand at 132.692 kb on + strand at 132.771 kb on - strand at 132.844 kb on + strand at 132.848 kb on + strand at 132.855 kb on + strand at 132.856 kb on - strand at 132.892 kb on - strand at 132.892 kb on - strand at 132.922 kb on + strand at 132.960 kb on + strand at 132.961 kb on - strand at 132.993 kb on + strand, within H281DRAFT_04030 at 132.993 kb on + strand, within H281DRAFT_04030 at 132.994 kb on - strand, within H281DRAFT_04030 at 133.100 kb on - strand at 133.109 kb on - strand, within H281DRAFT_04030 at 133.109 kb on - strand, within H281DRAFT_04030 at 133.147 kb on - strand, within H281DRAFT_04030 at 133.152 kb on + strand, within H281DRAFT_04030 at 133.152 kb on + strand, within H281DRAFT_04030 at 133.152 kb on + strand, within H281DRAFT_04030 at 133.153 kb on - strand, within H281DRAFT_04030 at 133.153 kb on - strand, within H281DRAFT_04030 at 133.304 kb on - strand at 133.594 kb on - strand, within H281DRAFT_04031 at 133.594 kb on - strand, within H281DRAFT_04031 at 133.633 kb on + strand, within H281DRAFT_04031 at 133.732 kb on + strand, within H281DRAFT_04031 at 133.885 kb on + strand, within H281DRAFT_04031 at 133.885 kb on + strand, within H281DRAFT_04031 at 133.886 kb on - strand, within H281DRAFT_04031 at 133.886 kb on - strand, within H281DRAFT_04031 at 133.886 kb on - strand, within H281DRAFT_04031 at 133.903 kb on + strand, within H281DRAFT_04031 at 133.903 kb on + strand, within H281DRAFT_04031 at 133.904 kb on - strand, within H281DRAFT_04031 at 133.904 kb on - strand, within H281DRAFT_04031 at 134.143 kb on + strand, within H281DRAFT_04031 at 134.143 kb on + strand, within H281DRAFT_04031 at 134.143 kb on + strand, within H281DRAFT_04031 at 134.284 kb on + strand at 134.285 kb on - strand at 134.294 kb on + strand at 134.294 kb on + strand at 134.294 kb on + strand at 134.294 kb on + strand at 134.295 kb on - strand at 134.421 kb on + strand, within H281DRAFT_04032 at 134.422 kb on - strand, within H281DRAFT_04032 at 134.422 kb on - strand, within H281DRAFT_04032 at 134.424 kb on + strand, within H281DRAFT_04032 at 134.425 kb on - strand, within H281DRAFT_04032 at 134.425 kb on - strand, within H281DRAFT_04032 at 134.532 kb on + strand, within H281DRAFT_04032 at 134.532 kb on + strand, within H281DRAFT_04032 at 134.533 kb on - strand, within H281DRAFT_04032 at 134.533 kb on - strand, within H281DRAFT_04032 at 134.533 kb on - strand, within H281DRAFT_04032 at 134.533 kb on - strand at 134.578 kb on - strand, within H281DRAFT_04032 at 134.628 kb on + strand, within H281DRAFT_04032 at 134.629 kb on - strand, within H281DRAFT_04032 at 134.629 kb on - strand, within H281DRAFT_04032 at 134.629 kb on - strand, within H281DRAFT_04032 at 134.629 kb on - strand, within H281DRAFT_04032 at 134.800 kb on - strand at 134.800 kb on - strand at 134.870 kb on + strand at 134.870 kb on + strand at 134.870 kb on + strand at 135.009 kb on + strand, within H281DRAFT_04033 at 135.009 kb on + strand, within H281DRAFT_04033 at 135.009 kb on + strand, within H281DRAFT_04033 at 135.009 kb on + strand, within H281DRAFT_04033 at 135.010 kb on - strand, within H281DRAFT_04033
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 132,367 + H281DRAFT_04029 0.34 -0.3 132,388 + H281DRAFT_04029 0.40 +0.2 132,413 - +2.7 132,416 - H281DRAFT_04029 0.49 +0.2 132,437 - H281DRAFT_04029 0.56 +0.1 132,451 + H281DRAFT_04029 0.60 -1.2 132,452 - H281DRAFT_04029 0.61 +0.7 132,461 - H281DRAFT_04029 0.63 -0.2 132,461 - H281DRAFT_04029 0.63 +0.1 132,537 + H281DRAFT_04029 0.88 +0.3 132,631 + -0.2 132,632 - -0.5 132,632 - +0.6 132,692 + +0.3 132,771 - -2.0 132,844 + -0.6 132,848 + +0.2 132,855 + -0.2 132,856 - +0.1 132,892 - -0.0 132,892 - +0.2 132,922 + +0.4 132,960 + -0.6 132,961 - -0.2 132,993 + H281DRAFT_04030 0.17 +0.2 132,993 + H281DRAFT_04030 0.17 -0.1 132,994 - H281DRAFT_04030 0.18 +0.6 133,100 - -0.6 133,109 - H281DRAFT_04030 0.59 +0.6 133,109 - H281DRAFT_04030 0.59 +0.2 133,147 - H281DRAFT_04030 0.72 -0.4 133,152 + H281DRAFT_04030 0.74 +0.0 133,152 + H281DRAFT_04030 0.74 +0.2 133,152 + H281DRAFT_04030 0.74 -0.0 133,153 - H281DRAFT_04030 0.74 -0.5 133,153 - H281DRAFT_04030 0.74 +0.7 133,304 - +0.3 133,594 - H281DRAFT_04031 0.26 -0.0 133,594 - H281DRAFT_04031 0.26 -0.0 133,633 + H281DRAFT_04031 0.31 -0.3 133,732 + H281DRAFT_04031 0.41 +0.0 133,885 + H281DRAFT_04031 0.57 +1.4 133,885 + H281DRAFT_04031 0.57 +0.4 133,886 - H281DRAFT_04031 0.57 -0.2 133,886 - H281DRAFT_04031 0.57 +0.1 133,886 - H281DRAFT_04031 0.57 -1.0 133,903 + H281DRAFT_04031 0.59 +0.8 133,903 + H281DRAFT_04031 0.59 -0.3 133,904 - H281DRAFT_04031 0.59 +0.1 133,904 - H281DRAFT_04031 0.59 -0.3 134,143 + H281DRAFT_04031 0.85 +0.2 134,143 + H281DRAFT_04031 0.85 +1.5 134,143 + H281DRAFT_04031 0.85 +0.1 134,284 + -0.0 134,285 - +0.2 134,294 + -0.2 134,294 + +0.5 134,294 + +0.2 134,294 + -0.1 134,295 - -0.8 134,421 + H281DRAFT_04032 0.18 +1.2 134,422 - H281DRAFT_04032 0.18 -0.2 134,422 - H281DRAFT_04032 0.18 -1.0 134,424 + H281DRAFT_04032 0.19 -0.0 134,425 - H281DRAFT_04032 0.19 -0.2 134,425 - H281DRAFT_04032 0.19 +0.2 134,532 + H281DRAFT_04032 0.52 -0.4 134,532 + H281DRAFT_04032 0.52 +0.2 134,533 - H281DRAFT_04032 0.53 -0.4 134,533 - H281DRAFT_04032 0.53 -0.1 134,533 - H281DRAFT_04032 0.53 -0.2 134,533 - -1.0 134,578 - H281DRAFT_04032 0.67 -1.5 134,628 + H281DRAFT_04032 0.82 -0.8 134,629 - H281DRAFT_04032 0.83 +0.4 134,629 - H281DRAFT_04032 0.83 -0.8 134,629 - H281DRAFT_04032 0.83 -0.9 134,629 - H281DRAFT_04032 0.83 -2.2 134,800 - -2.5 134,800 - -1.0 134,870 + +0.2 134,870 + +0.7 134,870 + -0.2 135,009 + H281DRAFT_04033 0.23 -0.4 135,009 + H281DRAFT_04033 0.23 -1.5 135,009 + H281DRAFT_04033 0.23 -0.0 135,009 + H281DRAFT_04033 0.23 -1.6 135,010 - H281DRAFT_04033 0.23 +0.0
Or see this region's nucleotide sequence