Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03947 and H281DRAFT_03948 are separated by 112 nucleotides H281DRAFT_03948 and H281DRAFT_03949 are separated by 298 nucleotides H281DRAFT_03949 and H281DRAFT_03950 overlap by 47 nucleotides
H281DRAFT_03947: H281DRAFT_03947 - Tetratricopeptide repeat-containing protein, at 48,835 to 50,718
_03947
H281DRAFT_03948: H281DRAFT_03948 - metabolite-proton symporter, at 50,831 to 52,132
_03948
H281DRAFT_03949: H281DRAFT_03949 - Ribosomal protein S18 acetylase RimI, at 52,431 to 52,976
_03949
H281DRAFT_03950: H281DRAFT_03950 - hypothetical protein, at 52,930 to 53,124
_03950
Position (kb) 50
51
52
53 Strain fitness (log2 ratio) -2
-1
0
1 at 49.974 kb on + strand, within H281DRAFT_03947 at 49.975 kb on - strand, within H281DRAFT_03947 at 50.040 kb on - strand, within H281DRAFT_03947 at 50.040 kb on - strand, within H281DRAFT_03947 at 50.203 kb on + strand, within H281DRAFT_03947 at 50.204 kb on - strand, within H281DRAFT_03947 at 50.354 kb on + strand, within H281DRAFT_03947 at 50.385 kb on + strand, within H281DRAFT_03947 at 50.386 kb on - strand, within H281DRAFT_03947 at 50.386 kb on - strand, within H281DRAFT_03947 at 50.740 kb on - strand at 50.844 kb on + strand at 50.844 kb on + strand at 50.872 kb on - strand at 51.084 kb on + strand, within H281DRAFT_03948 at 51.084 kb on + strand, within H281DRAFT_03948 at 51.084 kb on + strand, within H281DRAFT_03948 at 51.085 kb on - strand, within H281DRAFT_03948 at 51.085 kb on - strand, within H281DRAFT_03948 at 51.348 kb on + strand, within H281DRAFT_03948 at 51.364 kb on - strand, within H281DRAFT_03948 at 51.364 kb on - strand, within H281DRAFT_03948 at 51.666 kb on + strand, within H281DRAFT_03948 at 51.666 kb on + strand, within H281DRAFT_03948 at 51.705 kb on + strand, within H281DRAFT_03948 at 51.705 kb on + strand, within H281DRAFT_03948 at 51.705 kb on + strand, within H281DRAFT_03948 at 51.705 kb on + strand, within H281DRAFT_03948 at 51.706 kb on - strand at 51.801 kb on + strand, within H281DRAFT_03948 at 51.891 kb on + strand, within H281DRAFT_03948 at 51.891 kb on + strand, within H281DRAFT_03948 at 51.892 kb on - strand, within H281DRAFT_03948 at 51.892 kb on - strand, within H281DRAFT_03948 at 51.945 kb on - strand, within H281DRAFT_03948 at 51.993 kb on + strand, within H281DRAFT_03948 at 52.017 kb on + strand at 52.021 kb on - strand at 52.041 kb on + strand at 52.111 kb on + strand at 52.284 kb on + strand at 52.366 kb on + strand at 52.377 kb on + strand at 52.500 kb on - strand, within H281DRAFT_03949 at 52.509 kb on - strand, within H281DRAFT_03949 at 52.681 kb on + strand, within H281DRAFT_03949 at 52.681 kb on + strand, within H281DRAFT_03949 at 52.681 kb on + strand, within H281DRAFT_03949 at 52.681 kb on + strand, within H281DRAFT_03949 at 52.682 kb on - strand, within H281DRAFT_03949 at 52.828 kb on - strand, within H281DRAFT_03949 at 52.828 kb on - strand, within H281DRAFT_03949 at 52.869 kb on + strand, within H281DRAFT_03949 at 52.870 kb on - strand, within H281DRAFT_03949 at 52.890 kb on + strand, within H281DRAFT_03949 at 52.890 kb on + strand, within H281DRAFT_03949 at 52.890 kb on + strand, within H281DRAFT_03949 at 52.890 kb on + strand, within H281DRAFT_03949 at 52.891 kb on - strand, within H281DRAFT_03949 at 52.891 kb on - strand, within H281DRAFT_03949 at 52.891 kb on - strand, within H281DRAFT_03949 at 52.944 kb on + strand at 52.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 49,974 + H281DRAFT_03947 0.60 -1.6 49,975 - H281DRAFT_03947 0.61 -2.0 50,040 - H281DRAFT_03947 0.64 -0.6 50,040 - H281DRAFT_03947 0.64 -1.2 50,203 + H281DRAFT_03947 0.73 -2.3 50,204 - H281DRAFT_03947 0.73 -0.2 50,354 + H281DRAFT_03947 0.81 -0.4 50,385 + H281DRAFT_03947 0.82 +0.5 50,386 - H281DRAFT_03947 0.82 -1.6 50,386 - H281DRAFT_03947 0.82 -0.7 50,740 - +0.0 50,844 + +0.4 50,844 + +0.2 50,872 - -0.3 51,084 + H281DRAFT_03948 0.19 -0.6 51,084 + H281DRAFT_03948 0.19 -0.1 51,084 + H281DRAFT_03948 0.19 -1.2 51,085 - H281DRAFT_03948 0.20 +0.6 51,085 - H281DRAFT_03948 0.20 -0.0 51,348 + H281DRAFT_03948 0.40 +0.2 51,364 - H281DRAFT_03948 0.41 +0.4 51,364 - H281DRAFT_03948 0.41 +0.0 51,666 + H281DRAFT_03948 0.64 +0.1 51,666 + H281DRAFT_03948 0.64 -0.6 51,705 + H281DRAFT_03948 0.67 -0.2 51,705 + H281DRAFT_03948 0.67 -0.7 51,705 + H281DRAFT_03948 0.67 +0.1 51,705 + H281DRAFT_03948 0.67 +0.3 51,706 - +0.9 51,801 + H281DRAFT_03948 0.75 -1.3 51,891 + H281DRAFT_03948 0.81 -0.3 51,891 + H281DRAFT_03948 0.81 +0.9 51,892 - H281DRAFT_03948 0.81 +0.0 51,892 - H281DRAFT_03948 0.81 +0.3 51,945 - H281DRAFT_03948 0.86 +0.4 51,993 + H281DRAFT_03948 0.89 +0.1 52,017 + -0.1 52,021 - +1.0 52,041 + +1.0 52,111 + -0.8 52,284 + +0.7 52,366 + +0.3 52,377 + +0.3 52,500 - H281DRAFT_03949 0.13 +0.1 52,509 - H281DRAFT_03949 0.14 -0.4 52,681 + H281DRAFT_03949 0.46 -0.9 52,681 + H281DRAFT_03949 0.46 +1.1 52,681 + H281DRAFT_03949 0.46 -1.8 52,681 + H281DRAFT_03949 0.46 -1.2 52,682 - H281DRAFT_03949 0.46 +1.7 52,828 - H281DRAFT_03949 0.73 +0.2 52,828 - H281DRAFT_03949 0.73 +0.1 52,869 + H281DRAFT_03949 0.80 +0.1 52,870 - H281DRAFT_03949 0.80 +0.2 52,890 + H281DRAFT_03949 0.84 +1.1 52,890 + H281DRAFT_03949 0.84 -1.3 52,890 + H281DRAFT_03949 0.84 +0.6 52,890 + H281DRAFT_03949 0.84 +0.1 52,891 - H281DRAFT_03949 0.84 -0.9 52,891 - H281DRAFT_03949 0.84 -0.1 52,891 - H281DRAFT_03949 0.84 +1.0 52,944 + +0.4 52,945 - +0.0
Or see this region's nucleotide sequence