Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03511 and H281DRAFT_03512 are separated by 295 nucleotides H281DRAFT_03512 and H281DRAFT_03513 are separated by 153 nucleotides
H281DRAFT_03511: H281DRAFT_03511 - Uncharacterized conserved protein, at 8,160 to 9,581
_03511
H281DRAFT_03512: H281DRAFT_03512 - Cu+-exporting ATPase, at 9,877 to 12,234
_03512
H281DRAFT_03513: H281DRAFT_03513 - methyl-accepting chemotaxis sensory transducer, at 12,388 to 14,361
_03513
Position (kb) 9
10
11
12
13 Strain fitness (log2 ratio) -2
-1
0
1 at 8.945 kb on - strand, within H281DRAFT_03511 at 9.353 kb on + strand, within H281DRAFT_03511 at 9.414 kb on + strand, within H281DRAFT_03511 at 9.436 kb on + strand, within H281DRAFT_03511 at 9.436 kb on + strand, within H281DRAFT_03511 at 9.437 kb on - strand, within H281DRAFT_03511 at 9.437 kb on - strand, within H281DRAFT_03511 at 9.437 kb on - strand, within H281DRAFT_03511 at 9.548 kb on - strand at 9.548 kb on - strand at 9.548 kb on - strand at 9.709 kb on + strand at 9.744 kb on + strand at 9.745 kb on - strand at 9.745 kb on - strand at 9.866 kb on + strand at 9.866 kb on + strand at 9.866 kb on + strand at 9.867 kb on - strand at 9.867 kb on - strand at 10.150 kb on + strand, within H281DRAFT_03512 at 10.448 kb on - strand, within H281DRAFT_03512 at 10.525 kb on + strand, within H281DRAFT_03512 at 10.525 kb on + strand, within H281DRAFT_03512 at 10.540 kb on + strand, within H281DRAFT_03512 at 10.541 kb on - strand, within H281DRAFT_03512 at 10.548 kb on - strand, within H281DRAFT_03512 at 10.579 kb on + strand, within H281DRAFT_03512 at 10.579 kb on + strand, within H281DRAFT_03512 at 10.579 kb on + strand, within H281DRAFT_03512 at 11.235 kb on + strand, within H281DRAFT_03512 at 11.270 kb on + strand, within H281DRAFT_03512 at 11.271 kb on - strand, within H281DRAFT_03512 at 11.466 kb on + strand, within H281DRAFT_03512 at 11.466 kb on + strand, within H281DRAFT_03512 at 11.466 kb on + strand, within H281DRAFT_03512 at 11.467 kb on - strand, within H281DRAFT_03512 at 12.045 kb on + strand at 12.100 kb on + strand at 12.265 kb on - strand at 12.265 kb on - strand at 12.265 kb on - strand at 12.313 kb on - strand at 12.372 kb on + strand at 12.373 kb on - strand at 12.646 kb on + strand, within H281DRAFT_03513 at 12.646 kb on + strand, within H281DRAFT_03513 at 12.647 kb on - strand, within H281DRAFT_03513 at 12.647 kb on - strand, within H281DRAFT_03513 at 12.678 kb on - strand, within H281DRAFT_03513 at 12.819 kb on + strand, within H281DRAFT_03513 at 12.913 kb on + strand, within H281DRAFT_03513 at 13.084 kb on + strand, within H281DRAFT_03513 at 13.085 kb on - strand, within H281DRAFT_03513 at 13.085 kb on - strand, within H281DRAFT_03513 at 13.220 kb on - strand, within H281DRAFT_03513
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 8,945 - H281DRAFT_03511 0.55 +1.1 9,353 + H281DRAFT_03511 0.84 +0.9 9,414 + H281DRAFT_03511 0.88 -0.7 9,436 + H281DRAFT_03511 0.90 -0.1 9,436 + H281DRAFT_03511 0.90 +0.0 9,437 - H281DRAFT_03511 0.90 -0.3 9,437 - H281DRAFT_03511 0.90 +0.5 9,437 - H281DRAFT_03511 0.90 +1.2 9,548 - +0.2 9,548 - +0.1 9,548 - -0.2 9,709 + -0.3 9,744 + -0.1 9,745 - +0.2 9,745 - +0.1 9,866 + +0.3 9,866 + +1.3 9,866 + +0.5 9,867 - +0.9 9,867 - +0.5 10,150 + H281DRAFT_03512 0.12 +0.0 10,448 - H281DRAFT_03512 0.24 -2.0 10,525 + H281DRAFT_03512 0.27 +0.1 10,525 + H281DRAFT_03512 0.27 -0.7 10,540 + H281DRAFT_03512 0.28 +0.1 10,541 - H281DRAFT_03512 0.28 -0.5 10,548 - H281DRAFT_03512 0.28 -0.1 10,579 + H281DRAFT_03512 0.30 -0.8 10,579 + H281DRAFT_03512 0.30 -1.2 10,579 + H281DRAFT_03512 0.30 -0.2 11,235 + H281DRAFT_03512 0.58 +0.3 11,270 + H281DRAFT_03512 0.59 +0.0 11,271 - H281DRAFT_03512 0.59 -0.1 11,466 + H281DRAFT_03512 0.67 -1.3 11,466 + H281DRAFT_03512 0.67 -2.0 11,466 + H281DRAFT_03512 0.67 +0.7 11,467 - H281DRAFT_03512 0.67 -0.1 12,045 + -0.1 12,100 + +0.8 12,265 - -0.2 12,265 - +0.1 12,265 - -0.1 12,313 - +0.5 12,372 + +0.5 12,373 - +0.5 12,646 + H281DRAFT_03513 0.13 +0.5 12,646 + H281DRAFT_03513 0.13 +0.1 12,647 - H281DRAFT_03513 0.13 -0.4 12,647 - H281DRAFT_03513 0.13 -0.1 12,678 - H281DRAFT_03513 0.15 -0.1 12,819 + H281DRAFT_03513 0.22 +1.2 12,913 + H281DRAFT_03513 0.27 +0.2 13,084 + H281DRAFT_03513 0.35 +0.9 13,085 - H281DRAFT_03513 0.35 -0.5 13,085 - H281DRAFT_03513 0.35 -0.1 13,220 - H281DRAFT_03513 0.42 +0.6
Or see this region's nucleotide sequence