Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02948 and H281DRAFT_02949 are separated by 89 nucleotides H281DRAFT_02949 and H281DRAFT_02950 are separated by 181 nucleotides
H281DRAFT_02948: H281DRAFT_02948 - metabolite-proton symporter, at 561,456 to 562,838
_02948
H281DRAFT_02949: H281DRAFT_02949 - Xaa-Pro aminopeptidase, at 562,928 to 564,094
_02949
H281DRAFT_02950: H281DRAFT_02950 - DNA-binding transcriptional regulator, LysR family, at 564,276 to 565,265
_02950
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -1
0
1 at 562.832 kb on + strand at 562.832 kb on + strand at 562.862 kb on + strand at 562.862 kb on + strand at 562.993 kb on + strand at 563.047 kb on + strand at 563.163 kb on + strand, within H281DRAFT_02949 at 563.163 kb on + strand, within H281DRAFT_02949 at 563.424 kb on + strand, within H281DRAFT_02949 at 563.425 kb on - strand, within H281DRAFT_02949 at 563.529 kb on + strand, within H281DRAFT_02949 at 563.718 kb on + strand, within H281DRAFT_02949 at 563.719 kb on - strand, within H281DRAFT_02949 at 563.719 kb on - strand, within H281DRAFT_02949 at 563.719 kb on - strand, within H281DRAFT_02949 at 564.161 kb on - strand at 564.195 kb on + strand at 564.196 kb on - strand at 564.199 kb on + strand at 564.199 kb on + strand at 564.200 kb on - strand at 564.200 kb on - strand at 564.202 kb on + strand at 564.202 kb on + strand at 564.203 kb on - strand at 564.243 kb on - strand at 564.291 kb on - strand at 564.355 kb on + strand at 564.573 kb on + strand, within H281DRAFT_02950 at 564.573 kb on + strand, within H281DRAFT_02950 at 564.574 kb on - strand, within H281DRAFT_02950
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 562,832 + +0.7 562,832 + +0.8 562,862 + -0.2 562,862 + -0.5 562,993 + -1.4 563,047 + +1.3 563,163 + H281DRAFT_02949 0.20 +0.1 563,163 + H281DRAFT_02949 0.20 +0.7 563,424 + H281DRAFT_02949 0.43 +0.6 563,425 - H281DRAFT_02949 0.43 +0.4 563,529 + H281DRAFT_02949 0.51 +1.3 563,718 + H281DRAFT_02949 0.68 +0.2 563,719 - H281DRAFT_02949 0.68 -0.5 563,719 - H281DRAFT_02949 0.68 +0.4 563,719 - H281DRAFT_02949 0.68 +0.6 564,161 - -0.6 564,195 + +0.1 564,196 - -0.9 564,199 + -0.4 564,199 + +0.5 564,200 - +1.1 564,200 - +0.2 564,202 + +0.9 564,202 + -0.6 564,203 - -0.1 564,243 - -0.7 564,291 - -1.4 564,355 + -0.5 564,573 + H281DRAFT_02950 0.30 +0.2 564,573 + H281DRAFT_02950 0.30 -0.9 564,574 - H281DRAFT_02950 0.30 -0.2
Or see this region's nucleotide sequence