Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02662 and H281DRAFT_02663 are separated by 71 nucleotides H281DRAFT_02663 and H281DRAFT_02664 overlap by 82 nucleotides H281DRAFT_02664 and H281DRAFT_02665 are separated by 15 nucleotides H281DRAFT_02665 and H281DRAFT_02666 are separated by 41 nucleotides H281DRAFT_02666 and H281DRAFT_02667 overlap by 82 nucleotides
H281DRAFT_02662: H281DRAFT_02662 - Predicted xylanase/chitin deacetylase, at 243,868 to 244,770
_02662
H281DRAFT_02663: H281DRAFT_02663 - hypothetical protein, at 244,842 to 245,435
_02663
H281DRAFT_02664: H281DRAFT_02664 - hypothetical protein, at 245,354 to 245,521
_02664
H281DRAFT_02665: H281DRAFT_02665 - Outer membrane protein (porin), at 245,537 to 246,634
_02665
H281DRAFT_02666: H281DRAFT_02666 - hypothetical protein, at 246,676 to 246,837
_02666
H281DRAFT_02667: H281DRAFT_02667 - Outer membrane protein (porin), at 246,756 to 247,799
_02667
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1 at 244.563 kb on - strand, within H281DRAFT_02662 at 244.634 kb on - strand, within H281DRAFT_02662 at 245.513 kb on + strand at 245.539 kb on - strand at 245.546 kb on - strand at 245.680 kb on - strand, within H281DRAFT_02665 at 245.783 kb on - strand, within H281DRAFT_02665 at 245.805 kb on + strand, within H281DRAFT_02665 at 245.851 kb on + strand, within H281DRAFT_02665 at 245.913 kb on + strand, within H281DRAFT_02665 at 246.252 kb on - strand, within H281DRAFT_02665 at 246.365 kb on + strand, within H281DRAFT_02665 at 246.365 kb on + strand, within H281DRAFT_02665 at 246.511 kb on - strand, within H281DRAFT_02665 at 246.517 kb on + strand, within H281DRAFT_02665 at 246.835 kb on + strand at 247.031 kb on - strand, within H281DRAFT_02667 at 247.142 kb on - strand, within H281DRAFT_02667 at 247.156 kb on + strand, within H281DRAFT_02667 at 247.291 kb on + strand, within H281DRAFT_02667
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 244,563 - H281DRAFT_02662 0.77 -1.4 244,634 - H281DRAFT_02662 0.85 -1.4 245,513 + -0.0 245,539 - -0.6 245,546 - -0.8 245,680 - H281DRAFT_02665 0.13 -0.4 245,783 - H281DRAFT_02665 0.22 -0.3 245,805 + H281DRAFT_02665 0.24 -0.9 245,851 + H281DRAFT_02665 0.29 -1.4 245,913 + H281DRAFT_02665 0.34 +0.1 246,252 - H281DRAFT_02665 0.65 -0.1 246,365 + H281DRAFT_02665 0.75 +0.4 246,365 + H281DRAFT_02665 0.75 -0.8 246,511 - H281DRAFT_02665 0.89 -2.1 246,517 + H281DRAFT_02665 0.89 -0.5 246,835 + -0.9 247,031 - H281DRAFT_02667 0.26 +0.2 247,142 - H281DRAFT_02667 0.37 -0.1 247,156 + H281DRAFT_02667 0.38 -0.5 247,291 + H281DRAFT_02667 0.51 -0.4
Or see this region's nucleotide sequence