Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02606

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02605 and H281DRAFT_02606 are separated by 317 nucleotidesH281DRAFT_02606 and H281DRAFT_02607 are separated by 862 nucleotides H281DRAFT_02605: H281DRAFT_02605 - Glycosyltransferase involved in cell wall bisynthesis, at 181,372 to 182,343 _02605 H281DRAFT_02606: H281DRAFT_02606 - 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase, at 182,661 to 183,326 _02606 H281DRAFT_02607: H281DRAFT_02607 - protein of unknown function (DUF4148), at 184,189 to 184,497 _02607 Position (kb) 182 183 184Strain fitness (log2 ratio) -1 0 1 2at 181.794 kb on - strand, within H281DRAFT_02605at 181.796 kb on - strand, within H281DRAFT_02605at 181.944 kb on - strand, within H281DRAFT_02605at 182.052 kb on + strand, within H281DRAFT_02605at 182.084 kb on + strand, within H281DRAFT_02605at 183.175 kb on + strandat 184.056 kb on - strandat 184.137 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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181,794 - H281DRAFT_02605 0.43 -0.2
181,796 - H281DRAFT_02605 0.44 +0.3
181,944 - H281DRAFT_02605 0.59 +1.4
182,052 + H281DRAFT_02605 0.70 +1.0
182,084 + H281DRAFT_02605 0.73 +0.7
183,175 + +2.3
184,056 - +0.3
184,137 - -0.7

Or see this region's nucleotide sequence