Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02348 and H281DRAFT_02349 are separated by 1 nucleotides H281DRAFT_02349 and H281DRAFT_02350 overlap by 23 nucleotides H281DRAFT_02350 and H281DRAFT_02351 are separated by 1 nucleotides H281DRAFT_02351 and H281DRAFT_02352 are separated by 98 nucleotides
H281DRAFT_02348: H281DRAFT_02348 - general secretion pathway protein K, at 506,776 to 507,966
_02348
H281DRAFT_02349: H281DRAFT_02349 - general secretion pathway protein J, at 507,968 to 508,645
_02349
H281DRAFT_02350: H281DRAFT_02350 - general secretion pathway protein I, at 508,623 to 509,036
_02350
H281DRAFT_02351: H281DRAFT_02351 - general secretion pathway protein H, at 509,038 to 509,520
_02351
H281DRAFT_02352: H281DRAFT_02352 - general secretion pathway protein G, at 509,619 to 510,083
_02352
Position (kb) 508
509
510 Strain fitness (log2 ratio) -1
0
1 at 507.623 kb on + strand, within H281DRAFT_02348 at 507.623 kb on + strand, within H281DRAFT_02348 at 507.623 kb on + strand, within H281DRAFT_02348 at 507.624 kb on - strand, within H281DRAFT_02348 at 507.624 kb on - strand, within H281DRAFT_02348 at 507.624 kb on - strand, within H281DRAFT_02348 at 507.627 kb on + strand, within H281DRAFT_02348 at 507.628 kb on - strand, within H281DRAFT_02348 at 507.628 kb on - strand, within H281DRAFT_02348 at 507.642 kb on + strand, within H281DRAFT_02348 at 507.760 kb on + strand, within H281DRAFT_02348 at 507.760 kb on + strand, within H281DRAFT_02348 at 507.761 kb on - strand, within H281DRAFT_02348 at 507.761 kb on - strand, within H281DRAFT_02348 at 507.797 kb on - strand, within H281DRAFT_02348 at 507.946 kb on - strand at 508.158 kb on + strand, within H281DRAFT_02349 at 508.158 kb on + strand, within H281DRAFT_02349 at 508.244 kb on + strand, within H281DRAFT_02349 at 508.349 kb on + strand, within H281DRAFT_02349 at 508.349 kb on + strand, within H281DRAFT_02349 at 508.349 kb on + strand, within H281DRAFT_02349 at 508.350 kb on - strand, within H281DRAFT_02349 at 508.823 kb on + strand at 508.823 kb on + strand, within H281DRAFT_02350 at 508.823 kb on + strand, within H281DRAFT_02350 at 508.823 kb on + strand at 508.824 kb on - strand, within H281DRAFT_02350 at 508.824 kb on - strand, within H281DRAFT_02350 at 508.824 kb on - strand, within H281DRAFT_02350 at 508.911 kb on + strand, within H281DRAFT_02350 at 509.143 kb on + strand, within H281DRAFT_02351 at 509.144 kb on - strand, within H281DRAFT_02351 at 509.144 kb on - strand, within H281DRAFT_02351 at 509.620 kb on + strand at 509.728 kb on + strand, within H281DRAFT_02352 at 509.872 kb on + strand, within H281DRAFT_02352 at 510.017 kb on + strand, within H281DRAFT_02352 at 510.017 kb on + strand, within H281DRAFT_02352
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 507,623 + H281DRAFT_02348 0.71 +0.3 507,623 + H281DRAFT_02348 0.71 +1.1 507,623 + H281DRAFT_02348 0.71 +0.6 507,624 - H281DRAFT_02348 0.71 +0.3 507,624 - H281DRAFT_02348 0.71 +1.4 507,624 - H281DRAFT_02348 0.71 +1.5 507,627 + H281DRAFT_02348 0.71 -0.1 507,628 - H281DRAFT_02348 0.72 +0.8 507,628 - H281DRAFT_02348 0.72 +0.3 507,642 + H281DRAFT_02348 0.73 -0.3 507,760 + H281DRAFT_02348 0.83 +0.4 507,760 + H281DRAFT_02348 0.83 +0.6 507,761 - H281DRAFT_02348 0.83 +0.7 507,761 - H281DRAFT_02348 0.83 +0.1 507,797 - H281DRAFT_02348 0.86 +0.8 507,946 - -0.9 508,158 + H281DRAFT_02349 0.28 +1.2 508,158 + H281DRAFT_02349 0.28 +1.2 508,244 + H281DRAFT_02349 0.41 +0.2 508,349 + H281DRAFT_02349 0.56 +0.6 508,349 + H281DRAFT_02349 0.56 +0.2 508,349 + H281DRAFT_02349 0.56 +0.6 508,350 - H281DRAFT_02349 0.56 +0.2 508,823 + +1.4 508,823 + H281DRAFT_02350 0.48 +0.0 508,823 + H281DRAFT_02350 0.48 +0.5 508,823 + -1.1 508,824 - H281DRAFT_02350 0.49 +0.1 508,824 - H281DRAFT_02350 0.49 +0.3 508,824 - H281DRAFT_02350 0.49 +0.7 508,911 + H281DRAFT_02350 0.70 +0.2 509,143 + H281DRAFT_02351 0.22 +0.4 509,144 - H281DRAFT_02351 0.22 +0.3 509,144 - H281DRAFT_02351 0.22 +0.0 509,620 + -0.6 509,728 + H281DRAFT_02352 0.23 +0.0 509,872 + H281DRAFT_02352 0.54 -0.3 510,017 + H281DRAFT_02352 0.86 +0.2 510,017 + H281DRAFT_02352 0.86 +0.4
Or see this region's nucleotide sequence