Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02035 and H281DRAFT_02036 are separated by 247 nucleotides H281DRAFT_02036 and H281DRAFT_02037 are separated by 143 nucleotides
H281DRAFT_02035: H281DRAFT_02035 - hypothetical protein, at 156,827 to 157,534
_02035
H281DRAFT_02036: H281DRAFT_02036 - Thiol-disulfide isomerase or thioredoxin, at 157,782 to 158,315
_02036
H281DRAFT_02037: H281DRAFT_02037 - two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family, at 158,459 to 159,811
_02037
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1 at 156.832 kb on - strand at 156.906 kb on + strand, within H281DRAFT_02035 at 156.906 kb on + strand, within H281DRAFT_02035 at 156.906 kb on + strand, within H281DRAFT_02035 at 156.907 kb on - strand, within H281DRAFT_02035 at 156.907 kb on - strand, within H281DRAFT_02035 at 156.907 kb on - strand, within H281DRAFT_02035 at 156.907 kb on - strand, within H281DRAFT_02035 at 156.939 kb on + strand, within H281DRAFT_02035 at 157.152 kb on - strand, within H281DRAFT_02035 at 157.205 kb on + strand, within H281DRAFT_02035 at 157.205 kb on + strand, within H281DRAFT_02035 at 157.206 kb on - strand, within H281DRAFT_02035 at 157.206 kb on - strand, within H281DRAFT_02035 at 157.206 kb on - strand, within H281DRAFT_02035 at 157.206 kb on - strand, within H281DRAFT_02035 at 157.211 kb on + strand at 157.270 kb on + strand, within H281DRAFT_02035 at 157.399 kb on + strand, within H281DRAFT_02035 at 157.400 kb on - strand, within H281DRAFT_02035 at 157.400 kb on - strand, within H281DRAFT_02035 at 157.524 kb on + strand at 157.525 kb on - strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.696 kb on - strand at 157.696 kb on - strand at 157.696 kb on - strand at 157.696 kb on - strand at 157.700 kb on + strand at 157.709 kb on + strand at 157.833 kb on + strand at 157.974 kb on + strand, within H281DRAFT_02036 at 157.974 kb on + strand, within H281DRAFT_02036 at 157.974 kb on + strand, within H281DRAFT_02036 at 157.974 kb on + strand, within H281DRAFT_02036 at 157.975 kb on - strand, within H281DRAFT_02036 at 157.975 kb on - strand, within H281DRAFT_02036 at 158.006 kb on + strand, within H281DRAFT_02036 at 158.006 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.043 kb on + strand, within H281DRAFT_02036 at 158.045 kb on + strand, within H281DRAFT_02036 at 158.060 kb on + strand, within H281DRAFT_02036 at 158.109 kb on + strand, within H281DRAFT_02036 at 158.109 kb on + strand, within H281DRAFT_02036 at 158.110 kb on - strand, within H281DRAFT_02036 at 158.122 kb on - strand at 158.250 kb on + strand, within H281DRAFT_02036 at 158.359 kb on + strand at 158.360 kb on - strand at 158.365 kb on + strand at 158.366 kb on - strand at 158.793 kb on + strand, within H281DRAFT_02037 at 158.895 kb on + strand, within H281DRAFT_02037 at 159.214 kb on + strand, within H281DRAFT_02037 at 159.253 kb on + strand, within H281DRAFT_02037
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 156,832 - +0.2 156,906 + H281DRAFT_02035 0.11 -0.2 156,906 + H281DRAFT_02035 0.11 -0.5 156,906 + H281DRAFT_02035 0.11 +0.5 156,907 - H281DRAFT_02035 0.11 -0.5 156,907 - H281DRAFT_02035 0.11 +0.1 156,907 - H281DRAFT_02035 0.11 -0.2 156,907 - H281DRAFT_02035 0.11 -0.4 156,939 + H281DRAFT_02035 0.16 -0.2 157,152 - H281DRAFT_02035 0.46 -1.2 157,205 + H281DRAFT_02035 0.53 -0.2 157,205 + H281DRAFT_02035 0.53 -0.2 157,206 - H281DRAFT_02035 0.54 +0.1 157,206 - H281DRAFT_02035 0.54 -0.2 157,206 - H281DRAFT_02035 0.54 +0.0 157,206 - H281DRAFT_02035 0.54 +0.2 157,211 + +0.4 157,270 + H281DRAFT_02035 0.63 -0.6 157,399 + H281DRAFT_02035 0.81 -0.9 157,400 - H281DRAFT_02035 0.81 -0.8 157,400 - H281DRAFT_02035 0.81 -0.8 157,524 + +0.5 157,525 - -0.3 157,695 + -0.1 157,695 + +0.4 157,695 + -0.2 157,695 + -0.7 157,695 + -0.8 157,695 + +0.1 157,696 - +1.0 157,696 - -0.6 157,696 - +0.5 157,696 - -0.0 157,700 + -0.6 157,709 + +0.9 157,833 + -0.5 157,974 + H281DRAFT_02036 0.36 +1.4 157,974 + H281DRAFT_02036 0.36 -2.5 157,974 + H281DRAFT_02036 0.36 -0.6 157,974 + H281DRAFT_02036 0.36 -2.4 157,975 - H281DRAFT_02036 0.36 -2.5 157,975 - H281DRAFT_02036 0.36 -0.2 158,006 + H281DRAFT_02036 0.42 -0.2 158,006 + H281DRAFT_02036 0.42 -0.6 158,043 + H281DRAFT_02036 0.49 -1.6 158,043 + H281DRAFT_02036 0.49 +0.1 158,043 + H281DRAFT_02036 0.49 -1.2 158,043 + H281DRAFT_02036 0.49 -0.9 158,045 + H281DRAFT_02036 0.49 -1.6 158,060 + H281DRAFT_02036 0.52 -1.2 158,109 + H281DRAFT_02036 0.61 -0.9 158,109 + H281DRAFT_02036 0.61 +0.1 158,110 - H281DRAFT_02036 0.61 -1.8 158,122 - -1.6 158,250 + H281DRAFT_02036 0.88 +0.1 158,359 + -0.2 158,360 - +0.5 158,365 + -0.1 158,366 - +0.7 158,793 + H281DRAFT_02037 0.25 +0.4 158,895 + H281DRAFT_02037 0.32 -0.0 159,214 + H281DRAFT_02037 0.56 -0.2 159,253 + H281DRAFT_02037 0.59 +0.3
Or see this region's nucleotide sequence