Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01077 and H281DRAFT_01078 overlap by 4 nucleotides H281DRAFT_01078 and H281DRAFT_01079 are separated by 26 nucleotides
H281DRAFT_01077: H281DRAFT_01077 - benzoate/toluate 1,2-dioxygenase reductase subunit, at 1,209,590 to 1,210,612
_01077
H281DRAFT_01078: H281DRAFT_01078 - dihydroxycyclohexadiene carboxylate dehydrogenase, at 1,210,609 to 1,211,385
_01078
H281DRAFT_01079: H281DRAFT_01079 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 1,211,412 to 1,211,810
_01079
Position (kb) 1210
1211
1212 Strain fitness (log2 ratio) -1
0
1 at 1209.780 kb on - strand, within H281DRAFT_01077 at 1209.783 kb on + strand, within H281DRAFT_01077 at 1209.783 kb on + strand, within H281DRAFT_01077 at 1210.490 kb on + strand, within H281DRAFT_01077 at 1210.638 kb on - strand at 1210.804 kb on + strand, within H281DRAFT_01078 at 1210.805 kb on - strand, within H281DRAFT_01078 at 1211.339 kb on - strand at 1211.503 kb on + strand, within H281DRAFT_01079 at 1211.504 kb on - strand, within H281DRAFT_01079 at 1211.505 kb on + strand, within H281DRAFT_01079 at 1211.505 kb on + strand, within H281DRAFT_01079 at 1211.505 kb on + strand, within H281DRAFT_01079 at 1211.506 kb on - strand, within H281DRAFT_01079 at 1211.600 kb on - strand, within H281DRAFT_01079 at 1211.701 kb on - strand, within H281DRAFT_01079 at 1212.136 kb on + strand at 1212.148 kb on + strand at 1212.288 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,209,780 - H281DRAFT_01077 0.19 -1.1 1,209,783 + H281DRAFT_01077 0.19 +0.5 1,209,783 + H281DRAFT_01077 0.19 -0.6 1,210,490 + H281DRAFT_01077 0.88 -1.0 1,210,638 - -1.0 1,210,804 + H281DRAFT_01078 0.25 -0.3 1,210,805 - H281DRAFT_01078 0.25 -1.0 1,211,339 - -0.4 1,211,503 + H281DRAFT_01079 0.23 +0.4 1,211,504 - H281DRAFT_01079 0.23 -0.3 1,211,505 + H281DRAFT_01079 0.23 -0.0 1,211,505 + H281DRAFT_01079 0.23 +0.0 1,211,505 + H281DRAFT_01079 0.23 -0.5 1,211,506 - H281DRAFT_01079 0.24 +1.0 1,211,600 - H281DRAFT_01079 0.47 +0.4 1,211,701 - H281DRAFT_01079 0.72 -0.9 1,212,136 + -0.2 1,212,148 + -0.3 1,212,288 + -0.1
Or see this region's nucleotide sequence