Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00319 and H281DRAFT_00320 are separated by 273 nucleotides H281DRAFT_00320 and H281DRAFT_00321 are separated by 223 nucleotides H281DRAFT_00321 and H281DRAFT_00322 are separated by 118 nucleotides H281DRAFT_00322 and H281DRAFT_00323 are separated by 87 nucleotides
H281DRAFT_00319: H281DRAFT_00319 - recombination associated protein RdgC, at 348,006 to 348,929
_00319
H281DRAFT_00320: H281DRAFT_00320 - Uncharacterized conserved protein PhnB, glyoxalase superfamily, at 349,203 to 349,667
_00320
H281DRAFT_00321: H281DRAFT_00321 - Cell wall-associated hydrolase, NlpC family, at 349,891 to 351,606
_00321
H281DRAFT_00322: H281DRAFT_00322 - molybdenum-pterin binding domain-containing protein, at 351,725 to 352,150
_00322
H281DRAFT_00323: H281DRAFT_00323 - GAF domain-containing protein, at 352,238 to 352,738
_00323
Position (kb) 349
350
351
352 Strain fitness (log2 ratio) -1
0
1 at 349.051 kb on + strand at 349.052 kb on - strand at 349.052 kb on - strand at 349.097 kb on + strand at 349.097 kb on + strand at 349.139 kb on + strand at 349.277 kb on + strand, within H281DRAFT_00320 at 349.277 kb on + strand, within H281DRAFT_00320 at 349.802 kb on + strand at 349.982 kb on - strand at 350.127 kb on - strand, within H281DRAFT_00321 at 350.160 kb on + strand, within H281DRAFT_00321 at 350.171 kb on + strand, within H281DRAFT_00321 at 350.171 kb on + strand, within H281DRAFT_00321 at 350.195 kb on + strand, within H281DRAFT_00321 at 350.370 kb on - strand, within H281DRAFT_00321 at 350.394 kb on - strand, within H281DRAFT_00321 at 350.478 kb on + strand, within H281DRAFT_00321 at 350.818 kb on - strand, within H281DRAFT_00321 at 350.927 kb on + strand, within H281DRAFT_00321 at 350.928 kb on - strand, within H281DRAFT_00321 at 351.432 kb on - strand, within H281DRAFT_00321 at 351.598 kb on + strand at 351.713 kb on + strand at 351.725 kb on - strand at 351.842 kb on - strand, within H281DRAFT_00322 at 352.148 kb on + strand at 352.148 kb on + strand at 352.148 kb on + strand at 352.187 kb on + strand at 352.188 kb on - strand at 352.283 kb on + strand at 352.368 kb on + strand, within H281DRAFT_00323 at 352.528 kb on - strand, within H281DRAFT_00323 at 352.528 kb on - strand, within H281DRAFT_00323
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 349,051 + -0.4 349,052 - +0.6 349,052 - -1.3 349,097 + +0.0 349,097 + +0.5 349,139 + -0.2 349,277 + H281DRAFT_00320 0.16 +0.9 349,277 + H281DRAFT_00320 0.16 +0.9 349,802 + +1.6 349,982 - -1.0 350,127 - H281DRAFT_00321 0.14 +0.3 350,160 + H281DRAFT_00321 0.16 +0.5 350,171 + H281DRAFT_00321 0.16 +0.4 350,171 + H281DRAFT_00321 0.16 -0.5 350,195 + H281DRAFT_00321 0.18 -0.2 350,370 - H281DRAFT_00321 0.28 -0.4 350,394 - H281DRAFT_00321 0.29 +0.0 350,478 + H281DRAFT_00321 0.34 +0.4 350,818 - H281DRAFT_00321 0.54 +0.5 350,927 + H281DRAFT_00321 0.60 -0.5 350,928 - H281DRAFT_00321 0.60 +0.6 351,432 - H281DRAFT_00321 0.90 +1.0 351,598 + -0.3 351,713 + +0.0 351,725 - -1.5 351,842 - H281DRAFT_00322 0.27 +1.3 352,148 + -0.5 352,148 + +0.2 352,148 + -0.7 352,187 + -0.1 352,188 - -0.7 352,283 + -0.4 352,368 + H281DRAFT_00323 0.26 -0.3 352,528 - H281DRAFT_00323 0.58 -0.4 352,528 - H281DRAFT_00323 0.58 +1.0
Or see this region's nucleotide sequence