Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05294

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05292 and H281DRAFT_05293 are separated by 35 nucleotidesH281DRAFT_05293 and H281DRAFT_05294 are separated by 38 nucleotidesH281DRAFT_05294 and H281DRAFT_05295 are separated by 123 nucleotides H281DRAFT_05292: H281DRAFT_05292 - amino acid ABC transporter membrane protein 2, PAAT family, at 34,947 to 35,702 _05292 H281DRAFT_05293: H281DRAFT_05293 - amino acid ABC transporter ATP-binding protein, PAAT family, at 35,738 to 36,529 _05293 H281DRAFT_05294: H281DRAFT_05294 - histidine ammonia-lyase, at 36,568 to 38,244 _05294 H281DRAFT_05295: H281DRAFT_05295 - transcriptional regulator, GntR family, at 38,368 to 39,234 _05295 Position (kb) 36 37 38 39Strain fitness (log2 ratio) -1 0 1 2at 35.746 kb on + strandat 36.316 kb on - strand, within H281DRAFT_05293at 36.528 kb on - strandat 37.880 kb on + strand, within H281DRAFT_05294at 38.157 kb on + strandat 38.253 kb on + strandat 38.379 kb on + strandat 38.649 kb on - strand, within H281DRAFT_05295at 38.950 kb on + strandat 39.028 kb on + strand, within H281DRAFT_05295at 39.073 kb on + strand, within H281DRAFT_05295at 39.094 kb on + strand, within H281DRAFT_05295at 39.154 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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35,746 + +2.6
36,316 - H281DRAFT_05293 0.73 -0.2
36,528 - +0.3
37,880 + H281DRAFT_05294 0.78 +0.4
38,157 + -0.0
38,253 + +0.5
38,379 + -0.1
38,649 - H281DRAFT_05295 0.32 +0.3
38,950 + +2.0
39,028 + H281DRAFT_05295 0.76 -0.2
39,073 + H281DRAFT_05295 0.81 -0.4
39,094 + H281DRAFT_05295 0.84 +0.5
39,154 - -0.0

Or see this region's nucleotide sequence