Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03775

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03774 and H281DRAFT_03775 are separated by 380 nucleotidesH281DRAFT_03775 and H281DRAFT_03776 are separated by 47 nucleotidesH281DRAFT_03776 and H281DRAFT_03777 are separated by 262 nucleotides H281DRAFT_03774: H281DRAFT_03774 - Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain, at 291,600 to 293,600 _03774 H281DRAFT_03775: H281DRAFT_03775 - protein of unknown function (DUF4399), at 293,981 to 294,484 _03775 H281DRAFT_03776: H281DRAFT_03776 - protein of unknown function (DUF4399), at 294,532 to 294,963 _03776 H281DRAFT_03777: H281DRAFT_03777 - hypothetical protein, at 295,226 to 295,504 _03777 Position (kb) 293 294 295Strain fitness (log2 ratio) -1 0 1at 292.997 kb on - strand, within H281DRAFT_03774at 293.082 kb on + strand, within H281DRAFT_03774at 293.298 kb on + strand, within H281DRAFT_03774at 293.433 kb on + strandat 293.661 kb on + strandat 293.694 kb on - strandat 293.879 kb on - strandat 294.053 kb on - strand, within H281DRAFT_03775

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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292,997 - H281DRAFT_03774 0.70 -0.1
293,082 + H281DRAFT_03774 0.74 +0.5
293,298 + H281DRAFT_03774 0.85 +0.3
293,433 + +0.1
293,661 + -0.2
293,694 - +0.0
293,879 - +0.3
294,053 - H281DRAFT_03775 0.14 +0.6

Or see this region's nucleotide sequence