Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02883

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02882 and H281DRAFT_02883 are separated by 37 nucleotidesH281DRAFT_02883 and H281DRAFT_02884 are separated by 432 nucleotides H281DRAFT_02882: H281DRAFT_02882 - alpha,alpha-trehalase, at 482,209 to 484,092 _02882 H281DRAFT_02883: H281DRAFT_02883 - Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family, at 484,130 to 485,026 _02883 H281DRAFT_02884: H281DRAFT_02884 - peptide-methionine (S)-S-oxide reductase, at 485,459 to 486,202 _02884 Position (kb) 484 485 486Strain fitness (log2 ratio) -2 -1 0 1 2at 483.164 kb on - strand, within H281DRAFT_02882at 483.526 kb on + strand, within H281DRAFT_02882at 483.536 kb on + strand, within H281DRAFT_02882at 483.670 kb on - strand, within H281DRAFT_02882at 483.759 kb on + strandat 483.818 kb on - strand, within H281DRAFT_02882at 483.851 kb on - strand, within H281DRAFT_02882at 484.238 kb on - strand, within H281DRAFT_02883at 484.265 kb on + strand, within H281DRAFT_02883at 484.265 kb on + strandat 484.265 kb on + strand, within H281DRAFT_02883at 484.266 kb on - strand, within H281DRAFT_02883at 484.266 kb on - strand, within H281DRAFT_02883at 484.314 kb on + strand, within H281DRAFT_02883at 484.372 kb on + strand, within H281DRAFT_02883at 484.372 kb on + strand, within H281DRAFT_02883at 484.373 kb on - strand, within H281DRAFT_02883at 484.374 kb on + strand, within H281DRAFT_02883at 484.374 kb on + strand, within H281DRAFT_02883at 484.374 kb on + strand, within H281DRAFT_02883at 484.374 kb on + strand, within H281DRAFT_02883at 484.375 kb on - strand, within H281DRAFT_02883at 484.375 kb on - strand, within H281DRAFT_02883at 484.447 kb on + strand, within H281DRAFT_02883at 484.448 kb on - strand, within H281DRAFT_02883at 484.449 kb on + strand, within H281DRAFT_02883at 484.449 kb on + strand, within H281DRAFT_02883at 484.449 kb on + strand, within H281DRAFT_02883at 484.449 kb on + strand, within H281DRAFT_02883at 484.542 kb on + strand, within H281DRAFT_02883at 484.542 kb on + strand, within H281DRAFT_02883at 484.542 kb on + strand, within H281DRAFT_02883at 484.543 kb on - strand, within H281DRAFT_02883at 484.635 kb on + strand, within H281DRAFT_02883at 484.636 kb on - strand, within H281DRAFT_02883at 484.723 kb on + strand, within H281DRAFT_02883at 484.723 kb on + strand, within H281DRAFT_02883at 484.724 kb on - strand, within H281DRAFT_02883at 484.724 kb on - strandat 484.725 kb on + strand, within H281DRAFT_02883at 484.798 kb on + strand, within H281DRAFT_02883at 484.798 kb on + strand, within H281DRAFT_02883at 484.799 kb on - strand, within H281DRAFT_02883at 484.862 kb on - strand, within H281DRAFT_02883at 484.872 kb on + strand, within H281DRAFT_02883at 484.873 kb on - strand, within H281DRAFT_02883at 485.221 kb on + strandat 485.267 kb on - strandat 485.267 kb on - strandat 485.277 kb on - strandat 485.385 kb on - strandat 485.385 kb on - strandat 485.417 kb on + strandat 485.430 kb on + strandat 485.431 kb on - strandat 485.431 kb on - strandat 485.460 kb on + strandat 485.512 kb on + strandat 485.512 kb on + strandat 485.512 kb on + strandat 485.513 kb on - strandat 485.544 kb on + strand, within H281DRAFT_02884at 485.544 kb on + strand, within H281DRAFT_02884at 485.545 kb on - strand, within H281DRAFT_02884at 485.545 kb on - strand, within H281DRAFT_02884at 485.545 kb on - strand, within H281DRAFT_02884at 485.546 kb on + strand, within H281DRAFT_02884at 485.547 kb on - strand, within H281DRAFT_02884at 485.557 kb on - strand, within H281DRAFT_02884at 485.595 kb on + strand, within H281DRAFT_02884at 485.596 kb on - strand, within H281DRAFT_02884at 485.685 kb on + strand, within H281DRAFT_02884at 485.740 kb on - strand, within H281DRAFT_02884at 485.802 kb on + strand, within H281DRAFT_02884at 485.802 kb on + strand, within H281DRAFT_02884at 485.803 kb on - strand, within H281DRAFT_02884at 485.823 kb on + strand, within H281DRAFT_02884at 485.898 kb on + strand, within H281DRAFT_02884at 485.898 kb on + strand, within H281DRAFT_02884at 485.899 kb on - strand, within H281DRAFT_02884at 485.899 kb on - strand, within H281DRAFT_02884at 485.949 kb on - strand, within H281DRAFT_02884

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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483,164 - H281DRAFT_02882 0.51 -0.5
483,526 + H281DRAFT_02882 0.70 +0.0
483,536 + H281DRAFT_02882 0.70 -2.4
483,670 - H281DRAFT_02882 0.78 +0.3
483,759 + -1.0
483,818 - H281DRAFT_02882 0.85 +0.1
483,851 - H281DRAFT_02882 0.87 -0.5
484,238 - H281DRAFT_02883 0.12 -0.1
484,265 + H281DRAFT_02883 0.15 -0.6
484,265 + -0.0
484,265 + H281DRAFT_02883 0.15 +0.8
484,266 - H281DRAFT_02883 0.15 +0.4
484,266 - H281DRAFT_02883 0.15 -0.9
484,314 + H281DRAFT_02883 0.21 -0.3
484,372 + H281DRAFT_02883 0.27 +0.2
484,372 + H281DRAFT_02883 0.27 +0.1
484,373 - H281DRAFT_02883 0.27 -0.4
484,374 + H281DRAFT_02883 0.27 +0.1
484,374 + H281DRAFT_02883 0.27 +0.2
484,374 + H281DRAFT_02883 0.27 +0.4
484,374 + H281DRAFT_02883 0.27 +0.0
484,375 - H281DRAFT_02883 0.27 +0.3
484,375 - H281DRAFT_02883 0.27 +0.1
484,447 + H281DRAFT_02883 0.35 -0.0
484,448 - H281DRAFT_02883 0.35 -0.2
484,449 + H281DRAFT_02883 0.36 +0.1
484,449 + H281DRAFT_02883 0.36 +0.6
484,449 + H281DRAFT_02883 0.36 -0.2
484,449 + H281DRAFT_02883 0.36 -0.4
484,542 + H281DRAFT_02883 0.46 -0.2
484,542 + H281DRAFT_02883 0.46 +0.1
484,542 + H281DRAFT_02883 0.46 -0.0
484,543 - H281DRAFT_02883 0.46 -0.9
484,635 + H281DRAFT_02883 0.56 +0.5
484,636 - H281DRAFT_02883 0.56 -0.7
484,723 + H281DRAFT_02883 0.66 +1.0
484,723 + H281DRAFT_02883 0.66 +0.7
484,724 - H281DRAFT_02883 0.66 -0.5
484,724 - +2.5
484,725 + H281DRAFT_02883 0.66 +0.3
484,798 + H281DRAFT_02883 0.74 +0.7
484,798 + H281DRAFT_02883 0.74 -0.2
484,799 - H281DRAFT_02883 0.75 +0.8
484,862 - H281DRAFT_02883 0.82 -0.4
484,872 + H281DRAFT_02883 0.83 -0.6
484,873 - H281DRAFT_02883 0.83 -0.1
485,221 + -2.2
485,267 - -1.0
485,267 - +0.5
485,277 - -0.2
485,385 - +0.4
485,385 - -0.2
485,417 + -0.3
485,430 + +0.5
485,431 - +0.1
485,431 - +0.2
485,460 + -1.3
485,512 + -0.2
485,512 + +0.2
485,512 + +0.1
485,513 - +0.3
485,544 + H281DRAFT_02884 0.11 +0.9
485,544 + H281DRAFT_02884 0.11 -0.5
485,545 - H281DRAFT_02884 0.12 +0.7
485,545 - H281DRAFT_02884 0.12 -0.0
485,545 - H281DRAFT_02884 0.12 -0.6
485,546 + H281DRAFT_02884 0.12 +0.2
485,547 - H281DRAFT_02884 0.12 -0.1
485,557 - H281DRAFT_02884 0.13 +0.4
485,595 + H281DRAFT_02884 0.18 +0.5
485,596 - H281DRAFT_02884 0.18 -0.4
485,685 + H281DRAFT_02884 0.30 +0.3
485,740 - H281DRAFT_02884 0.38 +0.3
485,802 + H281DRAFT_02884 0.46 +0.0
485,802 + H281DRAFT_02884 0.46 +0.3
485,803 - H281DRAFT_02884 0.46 -0.9
485,823 + H281DRAFT_02884 0.49 +0.0
485,898 + H281DRAFT_02884 0.59 +0.2
485,898 + H281DRAFT_02884 0.59 +0.2
485,899 - H281DRAFT_02884 0.59 -0.3
485,899 - H281DRAFT_02884 0.59 +0.1
485,949 - H281DRAFT_02884 0.66 +1.2

Or see this region's nucleotide sequence