Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02262

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02260 and H281DRAFT_02261 are separated by 16 nucleotidesH281DRAFT_02261 and H281DRAFT_02262 are separated by 202 nucleotidesH281DRAFT_02262 and H281DRAFT_02263 overlap by 8 nucleotidesH281DRAFT_02263 and H281DRAFT_02264 are separated by 87 nucleotides H281DRAFT_02260: H281DRAFT_02260 - Zn-dependent peptidase ImmA, M78 family, at 406,439 to 407,647 _02260 H281DRAFT_02261: H281DRAFT_02261 - hypothetical protein, at 407,664 to 408,299 _02261 H281DRAFT_02262: H281DRAFT_02262 - hypothetical protein, at 408,502 to 408,633 _02262 H281DRAFT_02263: H281DRAFT_02263 - hypothetical protein, at 408,626 to 409,114 _02263 H281DRAFT_02264: H281DRAFT_02264 - phage/plasmid-like protein TIGR03299, at 409,202 to 410,167 _02264 Position (kb) 408 409Strain fitness (log2 ratio) -2 -1 0 1at 407.653 kb on - strandat 407.666 kb on - strandat 407.670 kb on - strandat 407.670 kb on - strandat 407.670 kb on - strandat 407.857 kb on - strand, within H281DRAFT_02261at 407.952 kb on - strand, within H281DRAFT_02261at 408.064 kb on + strand, within H281DRAFT_02261at 408.064 kb on + strand, within H281DRAFT_02261at 408.064 kb on + strand, within H281DRAFT_02261at 408.065 kb on - strand, within H281DRAFT_02261at 408.420 kb on + strandat 408.420 kb on + strandat 408.420 kb on + strandat 408.420 kb on + strandat 408.420 kb on + strandat 408.421 kb on - strandat 408.421 kb on - strandat 408.421 kb on - strandat 408.421 kb on - strandat 408.421 kb on - strandat 408.510 kb on + strandat 408.526 kb on + strand, within H281DRAFT_02262at 408.527 kb on - strand, within H281DRAFT_02262at 408.557 kb on + strand, within H281DRAFT_02262at 408.557 kb on + strand, within H281DRAFT_02262at 408.590 kb on - strand, within H281DRAFT_02262at 408.648 kb on - strandat 408.753 kb on + strand, within H281DRAFT_02263at 408.753 kb on + strand, within H281DRAFT_02263at 408.753 kb on + strand, within H281DRAFT_02263at 408.754 kb on - strand, within H281DRAFT_02263at 408.788 kb on + strand, within H281DRAFT_02263at 408.789 kb on - strand, within H281DRAFT_02263at 408.789 kb on - strand, within H281DRAFT_02263at 408.789 kb on - strand, within H281DRAFT_02263at 408.789 kb on - strand, within H281DRAFT_02263at 408.789 kb on - strand, within H281DRAFT_02263at 408.799 kb on + strand, within H281DRAFT_02263at 408.915 kb on + strand, within H281DRAFT_02263at 408.915 kb on + strandat 408.916 kb on - strand, within H281DRAFT_02263at 408.916 kb on - strand, within H281DRAFT_02263at 408.916 kb on - strand, within H281DRAFT_02263at 408.916 kb on - strand, within H281DRAFT_02263at 408.916 kb on - strand, within H281DRAFT_02263at 409.112 kb on + strandat 409.152 kb on - strandat 409.176 kb on + strandat 409.176 kb on + strandat 409.177 kb on - strandat 409.177 kb on - strandat 409.199 kb on + strandat 409.199 kb on + strandat 409.226 kb on + strandat 409.226 kb on + strandat 409.226 kb on + strandat 409.227 kb on - strandat 409.227 kb on - strandat 409.404 kb on + strand, within H281DRAFT_02264at 409.409 kb on + strand, within H281DRAFT_02264at 409.410 kb on - strand, within H281DRAFT_02264at 409.410 kb on - strand, within H281DRAFT_02264at 409.410 kb on - strand, within H281DRAFT_02264at 409.455 kb on - strand, within H281DRAFT_02264at 409.490 kb on + strand, within H281DRAFT_02264at 409.490 kb on + strand, within H281DRAFT_02264at 409.491 kb on - strand, within H281DRAFT_02264at 409.622 kb on + strand, within H281DRAFT_02264at 409.626 kb on + strand, within H281DRAFT_02264at 409.627 kb on - strand, within H281DRAFT_02264at 409.627 kb on - strand, within H281DRAFT_02264

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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407,653 - -0.4
407,666 - -0.7
407,670 - +0.3
407,670 - -0.2
407,670 - +0.1
407,857 - H281DRAFT_02261 0.30 +0.7
407,952 - H281DRAFT_02261 0.45 -0.5
408,064 + H281DRAFT_02261 0.63 +0.8
408,064 + H281DRAFT_02261 0.63 +0.2
408,064 + H281DRAFT_02261 0.63 +0.4
408,065 - H281DRAFT_02261 0.63 +0.1
408,420 + -0.9
408,420 + -0.2
408,420 + +0.7
408,420 + -0.5
408,420 + -0.0
408,421 - -0.0
408,421 - +0.1
408,421 - +0.2
408,421 - +0.3
408,421 - +0.2
408,510 + +0.5
408,526 + H281DRAFT_02262 0.18 +0.2
408,527 - H281DRAFT_02262 0.19 +0.4
408,557 + H281DRAFT_02262 0.42 +1.1
408,557 + H281DRAFT_02262 0.42 +0.7
408,590 - H281DRAFT_02262 0.67 +0.3
408,648 - -0.2
408,753 + H281DRAFT_02263 0.26 -0.1
408,753 + H281DRAFT_02263 0.26 -0.4
408,753 + H281DRAFT_02263 0.26 -0.0
408,754 - H281DRAFT_02263 0.26 -0.5
408,788 + H281DRAFT_02263 0.33 -0.6
408,789 - H281DRAFT_02263 0.33 +0.6
408,789 - H281DRAFT_02263 0.33 -0.5
408,789 - H281DRAFT_02263 0.33 +0.7
408,789 - H281DRAFT_02263 0.33 -2.1
408,789 - H281DRAFT_02263 0.33 -0.1
408,799 + H281DRAFT_02263 0.35 -0.2
408,915 + H281DRAFT_02263 0.59 -0.7
408,915 + +0.3
408,916 - H281DRAFT_02263 0.59 +0.0
408,916 - H281DRAFT_02263 0.59 -0.2
408,916 - H281DRAFT_02263 0.59 -0.2
408,916 - H281DRAFT_02263 0.59 -0.0
408,916 - H281DRAFT_02263 0.59 -0.3
409,112 + -0.2
409,152 - +0.9
409,176 + -0.6
409,176 + +1.3
409,177 - +0.2
409,177 - +0.2
409,199 + +0.3
409,199 + -0.3
409,226 + +0.1
409,226 + -0.2
409,226 + +0.1
409,227 - +0.8
409,227 - -0.3
409,404 + H281DRAFT_02264 0.21 +0.8
409,409 + H281DRAFT_02264 0.21 -0.3
409,410 - H281DRAFT_02264 0.22 -0.4
409,410 - H281DRAFT_02264 0.22 -0.2
409,410 - H281DRAFT_02264 0.22 -0.4
409,455 - H281DRAFT_02264 0.26 +0.3
409,490 + H281DRAFT_02264 0.30 +0.0
409,490 + H281DRAFT_02264 0.30 -0.0
409,491 - H281DRAFT_02264 0.30 +0.3
409,622 + H281DRAFT_02264 0.43 -1.5
409,626 + H281DRAFT_02264 0.44 -1.3
409,627 - H281DRAFT_02264 0.44 +0.2
409,627 - H281DRAFT_02264 0.44 +0.1

Or see this region's nucleotide sequence