Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01108

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01107 and H281DRAFT_01108 are separated by 54 nucleotidesH281DRAFT_01108 and H281DRAFT_01109 are separated by 161 nucleotidesH281DRAFT_01109 and H281DRAFT_01110 are separated by 34 nucleotides H281DRAFT_01107: H281DRAFT_01107 - hypothetical protein, at 1,246,460 to 1,248,307 _01107 H281DRAFT_01108: H281DRAFT_01108 - Glycosyltransferase involved in cell wall bisynthesis, at 1,248,362 to 1,249,417 _01108 H281DRAFT_01109: H281DRAFT_01109 - hypothetical protein, at 1,249,579 to 1,249,845 _01109 H281DRAFT_01110: H281DRAFT_01110 - Protein of unknown function (DUF2934), at 1,249,880 to 1,250,179 _01110 Position (kb) 1248 1249 1250Strain fitness (log2 ratio) -1 0 1at 1247.541 kb on - strand, within H281DRAFT_01107at 1248.279 kb on + strandat 1248.415 kb on - strandat 1249.039 kb on - strand, within H281DRAFT_01108at 1249.172 kb on + strand, within H281DRAFT_01108at 1249.365 kb on + strandat 1249.390 kb on - strandat 1249.598 kb on + strandat 1249.833 kb on - strandat 1249.864 kb on + strandat 1250.150 kb on + strandat 1250.151 kb on - strandat 1250.151 kb on - strandat 1250.184 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,247,541 - H281DRAFT_01107 0.58 -0.1
1,248,279 + +0.3
1,248,415 - -1.2
1,249,039 - H281DRAFT_01108 0.64 +0.8
1,249,172 + H281DRAFT_01108 0.77 +0.1
1,249,365 + -0.2
1,249,390 - +0.1
1,249,598 + -0.4
1,249,833 - +0.5
1,249,864 + +0.8
1,250,150 + +0.8
1,250,151 - +0.5
1,250,151 - +0.1
1,250,184 - -0.6

Or see this region's nucleotide sequence