Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01067

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01066 and H281DRAFT_01067 are separated by 4 nucleotidesH281DRAFT_01067 and H281DRAFT_01068 overlap by 4 nucleotidesH281DRAFT_01068 and H281DRAFT_01069 are separated by 10 nucleotides H281DRAFT_01066: H281DRAFT_01066 - Phenylpropionate dioxygenase, large terminal subunit, at 1,197,574 to 1,198,611 _01066 H281DRAFT_01067: H281DRAFT_01067 - NitT/TauT family transport system ATP-binding protein, at 1,198,616 to 1,199,440 _01067 H281DRAFT_01068: H281DRAFT_01068 - NitT/TauT family transport system permease protein, at 1,199,437 to 1,200,285 _01068 H281DRAFT_01069: H281DRAFT_01069 - Cytosine/adenosine deaminase, at 1,200,296 to 1,201,720 _01069 Position (kb) 1198 1199 1200Strain fitness (log2 ratio) -1 0 1at 1198.003 kb on + strand, within H281DRAFT_01066at 1198.466 kb on - strand, within H281DRAFT_01066at 1199.232 kb on - strand, within H281DRAFT_01067at 1199.558 kb on + strand, within H281DRAFT_01068at 1199.911 kb on - strand, within H281DRAFT_01068

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,198,003 + H281DRAFT_01066 0.41 -0.5
1,198,466 - H281DRAFT_01066 0.86 +0.1
1,199,232 - H281DRAFT_01067 0.75 +0.4
1,199,558 + H281DRAFT_01068 0.14 +0.2
1,199,911 - H281DRAFT_01068 0.56 +0.0

Or see this region's nucleotide sequence