Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04626

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04625 and H281DRAFT_04626 are separated by 76 nucleotidesH281DRAFT_04626 and H281DRAFT_04627 are separated by 132 nucleotidesH281DRAFT_04627 and H281DRAFT_04628 are separated by 8 nucleotides H281DRAFT_04625: H281DRAFT_04625 - 3-hydroxyacyl-CoA dehydrogenase, at 20,306 to 22,741 _04625 H281DRAFT_04626: H281DRAFT_04626 - acetyl-CoA acyltransferase, at 22,818 to 24,017 _04626 H281DRAFT_04627: H281DRAFT_04627 - Enoyl-CoA hydratase, at 24,150 to 24,920 _04627 H281DRAFT_04628: H281DRAFT_04628 - FdhD protein, at 24,929 to 25,768 _04628 Position (kb) 22 23 24 25Strain fitness (log2 ratio) -1 0 1at 21.846 kb on + strand, within H281DRAFT_04625at 21.847 kb on - strand, within H281DRAFT_04625at 21.847 kb on - strand, within H281DRAFT_04625at 21.888 kb on - strand, within H281DRAFT_04625at 22.125 kb on + strand, within H281DRAFT_04625at 22.125 kb on + strand, within H281DRAFT_04625at 22.126 kb on - strand, within H281DRAFT_04625at 22.126 kb on - strand, within H281DRAFT_04625at 22.129 kb on + strand, within H281DRAFT_04625at 22.129 kb on + strand, within H281DRAFT_04625at 22.160 kb on + strand, within H281DRAFT_04625at 22.160 kb on + strand, within H281DRAFT_04625at 22.160 kb on + strand, within H281DRAFT_04625at 22.161 kb on - strand, within H281DRAFT_04625at 22.161 kb on - strand, within H281DRAFT_04625at 22.756 kb on + strandat 22.756 kb on + strandat 22.757 kb on - strandat 22.778 kb on - strandat 22.778 kb on - strandat 22.842 kb on + strandat 22.842 kb on + strandat 22.842 kb on + strandat 22.842 kb on + strandat 22.901 kb on + strandat 22.902 kb on - strandat 22.902 kb on - strandat 23.237 kb on + strand, within H281DRAFT_04626at 23.238 kb on - strand, within H281DRAFT_04626at 23.238 kb on - strand, within H281DRAFT_04626at 23.413 kb on - strand, within H281DRAFT_04626at 23.505 kb on - strand, within H281DRAFT_04626at 23.946 kb on + strandat 23.946 kb on + strandat 23.946 kb on + strandat 23.946 kb on + strandat 23.947 kb on - strandat 23.947 kb on - strandat 23.952 kb on + strandat 23.953 kb on - strandat 24.037 kb on - strandat 24.501 kb on + strand, within H281DRAFT_04627at 24.501 kb on + strand, within H281DRAFT_04627at 24.502 kb on - strand, within H281DRAFT_04627at 24.502 kb on - strand, within H281DRAFT_04627at 24.502 kb on - strand, within H281DRAFT_04627at 24.958 kb on - strandat 24.966 kb on + strandat 24.966 kb on + strandat 24.967 kb on - strandat 24.967 kb on - strandat 24.967 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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21,846 + H281DRAFT_04625 0.63 +1.0
21,847 - H281DRAFT_04625 0.63 -1.0
21,847 - H281DRAFT_04625 0.63 -0.3
21,888 - H281DRAFT_04625 0.65 +0.1
22,125 + H281DRAFT_04625 0.75 +0.2
22,125 + H281DRAFT_04625 0.75 -1.6
22,126 - H281DRAFT_04625 0.75 -0.5
22,126 - H281DRAFT_04625 0.75 -0.1
22,129 + H281DRAFT_04625 0.75 +1.0
22,129 + H281DRAFT_04625 0.75 -0.1
22,160 + H281DRAFT_04625 0.76 +0.6
22,160 + H281DRAFT_04625 0.76 -0.0
22,160 + H281DRAFT_04625 0.76 +0.2
22,161 - H281DRAFT_04625 0.76 -0.3
22,161 - H281DRAFT_04625 0.76 -0.9
22,756 + +0.7
22,756 + +0.1
22,757 - +0.3
22,778 - +0.6
22,778 - -0.5
22,842 + -0.6
22,842 + -0.5
22,842 + +0.0
22,842 + -0.2
22,901 + -0.2
22,902 - +0.6
22,902 - -1.2
23,237 + H281DRAFT_04626 0.35 +1.1
23,238 - H281DRAFT_04626 0.35 +1.0
23,238 - H281DRAFT_04626 0.35 +0.2
23,413 - H281DRAFT_04626 0.50 +0.3
23,505 - H281DRAFT_04626 0.57 -0.0
23,946 + -0.1
23,946 + +0.0
23,946 + -0.4
23,946 + +0.2
23,947 - +0.4
23,947 - +0.6
23,952 + -0.2
23,953 - +0.1
24,037 - +0.4
24,501 + H281DRAFT_04627 0.46 -0.7
24,501 + H281DRAFT_04627 0.46 -0.3
24,502 - H281DRAFT_04627 0.46 +0.5
24,502 - H281DRAFT_04627 0.46 -1.0
24,502 - H281DRAFT_04627 0.46 +0.7
24,958 - -0.1
24,966 + +0.0
24,966 + -0.4
24,967 - +0.2
24,967 - +0.0
24,967 - +1.0

Or see this region's nucleotide sequence