Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03448

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03447 and H281DRAFT_03448 are separated by 474 nucleotidesH281DRAFT_03448 and H281DRAFT_03449 are separated by 23 nucleotides H281DRAFT_03447: H281DRAFT_03447 - phasin family protein, at 529,056 to 529,565 _03447 H281DRAFT_03448: H281DRAFT_03448 - Predicted ester cyclase, at 530,040 to 530,468 _03448 H281DRAFT_03449: H281DRAFT_03449 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 530,492 to 531,997 _03449 Position (kb) 530 531Strain fitness (log2 ratio) -1 0 1at 529.241 kb on - strand, within H281DRAFT_03447at 529.621 kb on - strandat 530.119 kb on - strand, within H281DRAFT_03448at 530.184 kb on + strand, within H281DRAFT_03448at 530.466 kb on + strandat 530.676 kb on - strand, within H281DRAFT_03449at 530.707 kb on - strand, within H281DRAFT_03449at 530.865 kb on + strand, within H281DRAFT_03449at 531.167 kb on - strand, within H281DRAFT_03449at 531.167 kb on - strand, within H281DRAFT_03449at 531.167 kb on - strand, within H281DRAFT_03449at 531.167 kb on - strand, within H281DRAFT_03449at 531.392 kb on + strand, within H281DRAFT_03449at 531.392 kb on + strand, within H281DRAFT_03449at 531.392 kb on + strand, within H281DRAFT_03449at 531.427 kb on + strand, within H281DRAFT_03449

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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529,241 - H281DRAFT_03447 0.36 +0.7
529,621 - +0.7
530,119 - H281DRAFT_03448 0.18 -0.4
530,184 + H281DRAFT_03448 0.34 +1.1
530,466 + -0.0
530,676 - H281DRAFT_03449 0.12 +1.1
530,707 - H281DRAFT_03449 0.14 +1.1
530,865 + H281DRAFT_03449 0.25 +1.1
531,167 - H281DRAFT_03449 0.45 -0.6
531,167 - H281DRAFT_03449 0.45 +0.3
531,167 - H281DRAFT_03449 0.45 +0.1
531,167 - H281DRAFT_03449 0.45 +0.9
531,392 + H281DRAFT_03449 0.60 -0.8
531,392 + H281DRAFT_03449 0.60 +0.3
531,392 + H281DRAFT_03449 0.60 +0.4
531,427 + H281DRAFT_03449 0.62 -0.2

Or see this region's nucleotide sequence