Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01190

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01189 and H281DRAFT_01190 are separated by 76 nucleotidesH281DRAFT_01190 and H281DRAFT_01191 overlap by 4 nucleotidesH281DRAFT_01191 and H281DRAFT_01192 overlap by 8 nucleotides H281DRAFT_01189: H281DRAFT_01189 - transcriptional regulator, AraC family, at 25,854 to 26,633 _01189 H281DRAFT_01190: H281DRAFT_01190 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 26,710 to 27,978 _01190 H281DRAFT_01191: H281DRAFT_01191 - Uncharacterized anaerobic dehydrogenase, at 27,975 to 28,241 _01191 H281DRAFT_01192: H281DRAFT_01192 - Glycine/D-amino acid oxidase (deaminating), at 28,234 to 29,415 _01192 Position (kb) 26 27 28Strain fitness (log2 ratio) -1 0 1 2 3at 25.801 kb on - strandat 25.863 kb on - strandat 26.387 kb on + strand, within H281DRAFT_01189at 27.131 kb on + strand, within H281DRAFT_01190at 27.711 kb on + strand, within H281DRAFT_01190at 27.711 kb on + strand, within H281DRAFT_01190at 27.880 kb on - strandat 28.949 kb on + strand, within H281DRAFT_01192

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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25,801 - -0.8
25,863 - +0.0
26,387 + H281DRAFT_01189 0.68 +1.1
27,131 + H281DRAFT_01190 0.33 +0.4
27,711 + H281DRAFT_01190 0.79 +0.0
27,711 + H281DRAFT_01190 0.79 +3.4
27,880 - +1.1
28,949 + H281DRAFT_01192 0.60 -0.5

Or see this region's nucleotide sequence