Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01173

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01172 and H281DRAFT_01173 are separated by 655 nucleotidesH281DRAFT_01173 and H281DRAFT_01174 are separated by 388 nucleotides H281DRAFT_01172: H281DRAFT_01172 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 5,177 to 5,965 _01172 H281DRAFT_01173: H281DRAFT_01173 - Outer membrane protein (porin), at 6,621 to 7,811 _01173 H281DRAFT_01174: H281DRAFT_01174 - Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase), at 8,200 to 9,261 _01174 Position (kb) 6 7 8Strain fitness (log2 ratio) -1 0 1at 6.678 kb on + strandat 6.679 kb on - strandat 6.681 kb on + strandat 7.024 kb on + strand, within H281DRAFT_01173at 7.204 kb on + strand, within H281DRAFT_01173at 7.222 kb on + strand, within H281DRAFT_01173at 7.709 kb on - strandat 7.738 kb on - strandat 8.120 kb on + strandat 8.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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6,678 + +0.1
6,679 - -0.2
6,681 + +0.1
7,024 + H281DRAFT_01173 0.34 +0.6
7,204 + H281DRAFT_01173 0.49 +0.5
7,222 + H281DRAFT_01173 0.50 +0.1
7,709 - -0.0
7,738 - -0.5
8,120 + -0.1
8,150 - +0.5

Or see this region's nucleotide sequence