Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00627

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00626 and H281DRAFT_00627 are separated by 581 nucleotidesH281DRAFT_00627 and H281DRAFT_00628 are separated by 188 nucleotidesH281DRAFT_00628 and H281DRAFT_00629 are separated by 59 nucleotides H281DRAFT_00626: H281DRAFT_00626 - hypothetical protein, at 702,180 to 703,022 _00626 H281DRAFT_00627: H281DRAFT_00627 - phosphoenolpyruvate synthase, at 703,604 to 706,009 _00627 H281DRAFT_00628: H281DRAFT_00628 - Membrane protein implicated in regulation of membrane protease activity, at 706,198 to 706,653 _00628 H281DRAFT_00629: H281DRAFT_00629 - SPFH domain, Band 7 family protein, at 706,713 to 707,645 _00629 Position (kb) 703 704 705 706 707Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 702.638 kb on - strand, within H281DRAFT_00626at 703.467 kb on + strandat 703.468 kb on - strandat 703.480 kb on + strandat 703.481 kb on - strandat 703.594 kb on - strandat 703.594 kb on - strandat 703.603 kb on + strandat 703.603 kb on + strandat 703.603 kb on + strandat 703.603 kb on + strandat 703.603 kb on + strandat 703.604 kb on - strandat 703.604 kb on - strandat 703.640 kb on + strandat 703.640 kb on + strandat 703.640 kb on + strandat 703.640 kb on + strandat 703.640 kb on + strandat 703.641 kb on - strandat 703.644 kb on + strandat 703.644 kb on + strandat 703.644 kb on + strandat 703.644 kb on + strandat 703.645 kb on - strandat 703.645 kb on - strandat 703.645 kb on - strandat 703.645 kb on - strandat 704.057 kb on + strandat 704.134 kb on + strand, within H281DRAFT_00627at 704.291 kb on + strand, within H281DRAFT_00627at 704.291 kb on + strand, within H281DRAFT_00627at 704.292 kb on - strand, within H281DRAFT_00627at 704.292 kb on - strand, within H281DRAFT_00627at 704.343 kb on - strand, within H281DRAFT_00627at 704.376 kb on - strand, within H281DRAFT_00627at 704.552 kb on + strand, within H281DRAFT_00627at 704.552 kb on + strand, within H281DRAFT_00627at 705.008 kb on + strand, within H281DRAFT_00627at 705.008 kb on + strand, within H281DRAFT_00627at 705.285 kb on - strand, within H281DRAFT_00627at 705.308 kb on - strand, within H281DRAFT_00627at 705.308 kb on - strand, within H281DRAFT_00627at 705.332 kb on + strand, within H281DRAFT_00627at 705.381 kb on - strand, within H281DRAFT_00627at 705.568 kb on + strand, within H281DRAFT_00627at 705.867 kb on - strandat 705.867 kb on - strandat 705.867 kb on - strandat 705.867 kb on - strandat 705.867 kb on - strandat 705.867 kb on - strandat 706.007 kb on + strandat 706.030 kb on + strandat 706.030 kb on + strandat 706.151 kb on - strandat 706.164 kb on + strandat 706.165 kb on - strandat 706.241 kb on + strandat 706.655 kb on - strandat 706.683 kb on + strandat 706.684 kb on - strandat 706.688 kb on + strandat 706.688 kb on + strandat 706.688 kb on + strandat 706.689 kb on - strandat 706.689 kb on - strandat 706.692 kb on + strandat 706.692 kb on + strandat 706.712 kb on + strandat 706.712 kb on + strandat 706.887 kb on + strand, within H281DRAFT_00629at 706.938 kb on - strand, within H281DRAFT_00629at 706.952 kb on + strand, within H281DRAFT_00629at 706.953 kb on - strand, within H281DRAFT_00629at 706.981 kb on - strand, within H281DRAFT_00629

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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702,638 - H281DRAFT_00626 0.54 -0.1
703,467 + -1.4
703,468 - -0.5
703,480 + -1.7
703,481 - -2.1
703,594 - -3.2
703,594 - -3.4
703,603 + -2.4
703,603 + -3.4
703,603 + -3.6
703,603 + -2.3
703,603 + -0.3
703,604 - -0.2
703,604 - -1.5
703,640 + -3.0
703,640 + -4.3
703,640 + -3.3
703,640 + -2.3
703,640 + -2.8
703,641 - -2.0
703,644 + -2.4
703,644 + -3.6
703,644 + -3.2
703,644 + -2.9
703,645 - -2.1
703,645 - -2.1
703,645 - -3.1
703,645 - -1.9
704,057 + -1.5
704,134 + H281DRAFT_00627 0.22 -2.3
704,291 + H281DRAFT_00627 0.29 -2.0
704,291 + H281DRAFT_00627 0.29 -3.0
704,292 - H281DRAFT_00627 0.29 -2.0
704,292 - H281DRAFT_00627 0.29 -5.0
704,343 - H281DRAFT_00627 0.31 -2.3
704,376 - H281DRAFT_00627 0.32 -2.3
704,552 + H281DRAFT_00627 0.39 -3.9
704,552 + H281DRAFT_00627 0.39 +1.0
705,008 + H281DRAFT_00627 0.58 -1.5
705,008 + H281DRAFT_00627 0.58 -1.5
705,285 - H281DRAFT_00627 0.70 -1.1
705,308 - H281DRAFT_00627 0.71 -2.9
705,308 - H281DRAFT_00627 0.71 -2.2
705,332 + H281DRAFT_00627 0.72 -1.5
705,381 - H281DRAFT_00627 0.74 -2.9
705,568 + H281DRAFT_00627 0.82 -3.3
705,867 - -0.5
705,867 - -4.1
705,867 - -4.5
705,867 - +0.0
705,867 - -2.1
705,867 - -0.5
706,007 + -1.6
706,030 + -1.0
706,030 + -1.6
706,151 - +0.4
706,164 + -1.7
706,165 - +0.4
706,241 + +0.0
706,655 - +0.2
706,683 + -0.4
706,684 - -0.4
706,688 + -0.6
706,688 + +0.5
706,688 + +0.5
706,689 - +0.4
706,689 - -0.1
706,692 + -0.5
706,692 + +0.1
706,712 + +0.3
706,712 + +1.0
706,887 + H281DRAFT_00629 0.19 +0.2
706,938 - H281DRAFT_00629 0.24 +0.3
706,952 + H281DRAFT_00629 0.26 -0.4
706,953 - H281DRAFT_00629 0.26 -0.3
706,981 - H281DRAFT_00629 0.29 -0.8

Or see this region's nucleotide sequence