Experiment: McCas_H2_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01280 and MMP_RS01285 overlap by 1 nucleotides MMP_RS01285 and MMP_RS01290 are separated by 33 nucleotides MMP_RS01290 and MMP_RS01295 overlap by 23 nucleotides MMP_RS01295 and MMP_RS01300 are separated by 51 nucleotides MMP_RS01300 and MMP_RS01305 are separated by 1 nucleotides
MMP_RS01280: MMP_RS01280 - DUF515 domain-containing protein, at 241,487 to 242,635
_RS01280
MMP_RS01285: MMP_RS01285 - hypothetical protein, at 242,635 to 243,528
_RS01285
MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960
_RS01290
MMP_RS01295: MMP_RS01295 - hypothetical protein, at 243,938 to 244,393
_RS01295
MMP_RS01300: MMP_RS01300 - hypothetical protein, at 244,445 to 244,930
_RS01300
MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789
_RS01305
Position (kb) 243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 242.606 kb on - strand at 242.630 kb on + strand at 242.652 kb on + strand at 242.656 kb on - strand at 242.656 kb on - strand at 242.721 kb on - strand at 242.722 kb on + strand at 242.734 kb on - strand, within MMP_RS01285 at 242.758 kb on + strand, within MMP_RS01285 at 242.892 kb on - strand, within MMP_RS01285 at 243.008 kb on - strand, within MMP_RS01285 at 243.009 kb on + strand, within MMP_RS01285 at 243.011 kb on - strand, within MMP_RS01285 at 243.015 kb on - strand, within MMP_RS01285 at 243.072 kb on + strand, within MMP_RS01285 at 243.114 kb on + strand, within MMP_RS01285 at 243.114 kb on + strand, within MMP_RS01285 at 243.188 kb on - strand, within MMP_RS01285 at 243.239 kb on - strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.393 kb on + strand, within MMP_RS01285 at 243.437 kb on + strand, within MMP_RS01285 at 243.439 kb on + strand at 243.442 kb on + strand at 243.532 kb on + strand at 243.558 kb on - strand at 243.629 kb on - strand, within MMP_RS01290 at 243.843 kb on - strand, within MMP_RS01290 at 243.843 kb on - strand, within MMP_RS01290 at 243.844 kb on + strand, within MMP_RS01290 at 243.844 kb on + strand, within MMP_RS01290 at 243.845 kb on - strand, within MMP_RS01290 at 243.845 kb on - strand, within MMP_RS01290 at 243.846 kb on + strand, within MMP_RS01290 at 243.846 kb on + strand, within MMP_RS01290 at 243.849 kb on - strand, within MMP_RS01290 at 243.850 kb on + strand, within MMP_RS01290 at 243.855 kb on - strand, within MMP_RS01290 at 243.870 kb on + strand, within MMP_RS01290 at 243.870 kb on + strand, within MMP_RS01290 at 243.877 kb on - strand, within MMP_RS01290 at 243.878 kb on + strand, within MMP_RS01290 at 243.878 kb on + strand, within MMP_RS01290 at 243.879 kb on - strand, within MMP_RS01290 at 243.879 kb on - strand, within MMP_RS01290 at 243.884 kb on + strand, within MMP_RS01290 at 243.884 kb on + strand, within MMP_RS01290 at 243.999 kb on - strand, within MMP_RS01295 at 244.000 kb on + strand, within MMP_RS01295 at 244.131 kb on + strand, within MMP_RS01295 at 244.185 kb on + strand, within MMP_RS01295 at 244.189 kb on - strand, within MMP_RS01295 at 244.189 kb on - strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.191 kb on - strand, within MMP_RS01295 at 244.214 kb on + strand, within MMP_RS01295 at 244.229 kb on + strand, within MMP_RS01295 at 244.288 kb on - strand, within MMP_RS01295 at 244.313 kb on + strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.337 kb on + strand, within MMP_RS01295 at 244.337 kb on + strand, within MMP_RS01295 at 244.381 kb on - strand at 244.407 kb on + strand at 244.414 kb on + strand at 244.439 kb on - strand at 244.441 kb on - strand at 244.471 kb on - strand at 244.472 kb on + strand at 244.491 kb on - strand at 244.534 kb on + strand, within MMP_RS01300 at 244.588 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.607 kb on + strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.614 kb on - strand, within MMP_RS01300 at 244.614 kb on - strand, within MMP_RS01300 at 244.615 kb on + strand, within MMP_RS01300 at 244.615 kb on + strand, within MMP_RS01300 at 244.623 kb on + strand, within MMP_RS01300 at 244.623 kb on + strand, within MMP_RS01300 at 244.653 kb on - strand, within MMP_RS01300 at 244.653 kb on - strand, within MMP_RS01300 at 244.664 kb on + strand, within MMP_RS01300 at 244.664 kb on + strand, within MMP_RS01300 at 244.667 kb on - strand, within MMP_RS01300 at 244.733 kb on + strand, within MMP_RS01300 at 244.735 kb on - strand, within MMP_RS01300 at 244.735 kb on - strand, within MMP_RS01300 at 244.742 kb on + strand, within MMP_RS01300 at 244.798 kb on - strand, within MMP_RS01300 at 244.798 kb on - strand, within MMP_RS01300 at 244.799 kb on + strand, within MMP_RS01300
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete no stress control remove 242,606 - -2.2 242,630 + -1.9 242,652 + -2.1 242,656 - -1.8 242,656 - -1.8 242,721 - -1.9 242,722 + -2.6 242,734 - MMP_RS01285 0.11 -2.3 242,758 + MMP_RS01285 0.14 -1.5 242,892 - MMP_RS01285 0.29 -2.5 243,008 - MMP_RS01285 0.42 -1.6 243,009 + MMP_RS01285 0.42 -2.5 243,011 - MMP_RS01285 0.42 -1.8 243,015 - MMP_RS01285 0.43 -1.4 243,072 + MMP_RS01285 0.49 -2.7 243,114 + MMP_RS01285 0.54 -1.9 243,114 + MMP_RS01285 0.54 -0.7 243,188 - MMP_RS01285 0.62 -3.0 243,239 - MMP_RS01285 0.68 -2.0 243,292 + MMP_RS01285 0.73 -2.0 243,292 + MMP_RS01285 0.73 -2.4 243,292 + MMP_RS01285 0.73 -2.1 243,393 + MMP_RS01285 0.85 -1.8 243,437 + MMP_RS01285 0.90 -1.7 243,439 + -1.3 243,442 + -1.8 243,532 + -0.8 243,558 - -1.7 243,629 - MMP_RS01290 0.17 -0.9 243,843 - MMP_RS01290 0.70 -2.1 243,843 - MMP_RS01290 0.70 -2.3 243,844 + MMP_RS01290 0.71 -1.9 243,844 + MMP_RS01290 0.71 -2.9 243,845 - MMP_RS01290 0.71 -1.6 243,845 - MMP_RS01290 0.71 -2.4 243,846 + MMP_RS01290 0.71 -2.7 243,846 + MMP_RS01290 0.71 -2.5 243,849 - MMP_RS01290 0.72 -1.3 243,850 + MMP_RS01290 0.72 -3.6 243,855 - MMP_RS01290 0.73 -2.0 243,870 + MMP_RS01290 0.77 -1.9 243,870 + MMP_RS01290 0.77 -1.6 243,877 - MMP_RS01290 0.79 -2.5 243,878 + MMP_RS01290 0.79 -1.6 243,878 + MMP_RS01290 0.79 -2.6 243,879 - MMP_RS01290 0.79 -2.6 243,879 - MMP_RS01290 0.79 -2.3 243,884 + MMP_RS01290 0.81 -2.2 243,884 + MMP_RS01290 0.81 -3.6 243,999 - MMP_RS01295 0.13 -2.2 244,000 + MMP_RS01295 0.14 -2.0 244,131 + MMP_RS01295 0.42 -2.8 244,185 + MMP_RS01295 0.54 -0.9 244,189 - MMP_RS01295 0.55 -1.3 244,189 - MMP_RS01295 0.55 -2.4 244,190 + MMP_RS01295 0.55 -1.5 244,190 + MMP_RS01295 0.55 -3.4 244,190 + MMP_RS01295 0.55 -0.5 244,191 - MMP_RS01295 0.55 -1.4 244,214 + MMP_RS01295 0.61 -1.7 244,229 + MMP_RS01295 0.64 -1.8 244,288 - MMP_RS01295 0.77 -2.2 244,313 + MMP_RS01295 0.82 -2.7 244,336 - MMP_RS01295 0.87 -2.4 244,336 - MMP_RS01295 0.87 -1.8 244,336 - MMP_RS01295 0.87 -2.8 244,336 - MMP_RS01295 0.87 -2.3 244,336 - MMP_RS01295 0.87 -3.6 244,337 + MMP_RS01295 0.88 +0.0 244,337 + MMP_RS01295 0.88 -1.3 244,381 - +0.1 244,407 + -0.3 244,414 + +0.5 244,439 - -0.0 244,441 - +0.9 244,471 - -0.1 244,472 + -0.9 244,491 - -0.1 244,534 + MMP_RS01300 0.18 +0.4 244,588 - MMP_RS01300 0.29 -0.0 244,606 - MMP_RS01300 0.33 +0.1 244,606 - MMP_RS01300 0.33 +0.5 244,606 - MMP_RS01300 0.33 -0.3 244,606 - MMP_RS01300 0.33 +0.9 244,606 - MMP_RS01300 0.33 +0.9 244,606 - MMP_RS01300 0.33 -0.0 244,607 + MMP_RS01300 0.33 -0.3 244,610 - MMP_RS01300 0.34 -0.1 244,610 - MMP_RS01300 0.34 -1.1 244,610 - MMP_RS01300 0.34 -0.5 244,610 - MMP_RS01300 0.34 -0.0 244,610 - MMP_RS01300 0.34 +0.4 244,610 - MMP_RS01300 0.34 -0.3 244,610 - MMP_RS01300 0.34 -1.3 244,610 - MMP_RS01300 0.34 +0.2 244,611 + MMP_RS01300 0.34 +0.5 244,611 + MMP_RS01300 0.34 -0.8 244,611 + MMP_RS01300 0.34 +1.2 244,612 - MMP_RS01300 0.34 -0.2 244,612 - MMP_RS01300 0.34 -0.8 244,612 - MMP_RS01300 0.34 -0.1 244,612 - MMP_RS01300 0.34 -0.9 244,612 - MMP_RS01300 0.34 +0.1 244,613 + MMP_RS01300 0.35 +1.5 244,613 + MMP_RS01300 0.35 -0.9 244,613 + MMP_RS01300 0.35 -0.6 244,614 - MMP_RS01300 0.35 -1.1 244,614 - MMP_RS01300 0.35 -0.1 244,615 + MMP_RS01300 0.35 +2.1 244,615 + MMP_RS01300 0.35 -0.0 244,623 + MMP_RS01300 0.37 -0.0 244,623 + MMP_RS01300 0.37 +0.2 244,653 - MMP_RS01300 0.43 -0.1 244,653 - MMP_RS01300 0.43 +0.4 244,664 + MMP_RS01300 0.45 +0.6 244,664 + MMP_RS01300 0.45 -1.0 244,667 - MMP_RS01300 0.46 -0.1 244,733 + MMP_RS01300 0.59 +0.5 244,735 - MMP_RS01300 0.60 +0.8 244,735 - MMP_RS01300 0.60 -0.1 244,742 + MMP_RS01300 0.61 +1.2 244,798 - MMP_RS01300 0.73 -0.8 244,798 - MMP_RS01300 0.73 -0.7 244,799 + MMP_RS01300 0.73 -0.5
Or see this region's nucleotide sequence