Experiment: McCas_H2_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01270 and MMP_RS01275 are separated by 1 nucleotides MMP_RS01275 and MMP_RS01280 are separated by 125 nucleotides
MMP_RS01270: MMP_RS01270 - prepilin peptidase, at 239,930 to 240,970
_RS01270
MMP_RS01275: MMP_RS01275 - class III signal peptide-containing protein, at 240,972 to 241,361
_RS01275
MMP_RS01280: MMP_RS01280 - DUF515 domain-containing protein, at 241,487 to 242,635
_RS01280
Position (kb) 240
241
242 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 239.999 kb on - strand at 240.000 kb on + strand at 240.001 kb on - strand at 240.001 kb on - strand at 240.052 kb on + strand, within MMP_RS01270 at 240.132 kb on - strand, within MMP_RS01270 at 240.166 kb on - strand, within MMP_RS01270 at 240.167 kb on + strand, within MMP_RS01270 at 240.175 kb on - strand, within MMP_RS01270 at 240.208 kb on - strand, within MMP_RS01270 at 240.208 kb on - strand, within MMP_RS01270 at 240.208 kb on - strand, within MMP_RS01270 at 240.209 kb on + strand, within MMP_RS01270 at 240.212 kb on - strand, within MMP_RS01270 at 240.213 kb on + strand, within MMP_RS01270 at 240.213 kb on + strand, within MMP_RS01270 at 240.249 kb on - strand, within MMP_RS01270 at 240.250 kb on + strand, within MMP_RS01270 at 240.311 kb on + strand, within MMP_RS01270 at 240.354 kb on - strand, within MMP_RS01270 at 240.400 kb on + strand, within MMP_RS01270 at 240.415 kb on + strand, within MMP_RS01270 at 240.482 kb on + strand, within MMP_RS01270 at 240.484 kb on - strand, within MMP_RS01270 at 240.510 kb on + strand, within MMP_RS01270 at 240.514 kb on + strand, within MMP_RS01270 at 240.566 kb on - strand, within MMP_RS01270 at 240.601 kb on + strand, within MMP_RS01270 at 240.666 kb on - strand, within MMP_RS01270 at 240.683 kb on + strand, within MMP_RS01270 at 240.688 kb on + strand, within MMP_RS01270 at 240.705 kb on - strand, within MMP_RS01270 at 240.724 kb on - strand, within MMP_RS01270 at 240.884 kb on + strand at 240.884 kb on + strand at 240.934 kb on + strand at 240.969 kb on + strand at 241.047 kb on + strand, within MMP_RS01275 at 241.221 kb on + strand, within MMP_RS01275 at 241.232 kb on - strand, within MMP_RS01275 at 241.235 kb on + strand, within MMP_RS01275 at 241.243 kb on + strand, within MMP_RS01275 at 241.244 kb on - strand, within MMP_RS01275 at 241.383 kb on + strand at 241.400 kb on - strand at 241.407 kb on - strand at 241.408 kb on + strand at 241.414 kb on + strand at 241.429 kb on - strand at 241.429 kb on - strand at 241.429 kb on - strand at 241.430 kb on + strand at 241.430 kb on + strand at 241.431 kb on - strand at 241.435 kb on - strand at 241.451 kb on - strand at 241.465 kb on + strand at 241.486 kb on - strand at 241.502 kb on - strand at 241.502 kb on - strand at 241.511 kb on + strand at 241.691 kb on + strand, within MMP_RS01280 at 241.742 kb on - strand, within MMP_RS01280 at 241.743 kb on + strand, within MMP_RS01280 at 241.743 kb on + strand, within MMP_RS01280 at 241.755 kb on - strand, within MMP_RS01280 at 241.822 kb on + strand, within MMP_RS01280 at 241.829 kb on - strand, within MMP_RS01280 at 241.829 kb on - strand, within MMP_RS01280 at 241.832 kb on + strand, within MMP_RS01280 at 241.862 kb on + strand, within MMP_RS01280 at 241.862 kb on + strand, within MMP_RS01280 at 241.866 kb on + strand, within MMP_RS01280 at 241.874 kb on - strand, within MMP_RS01280 at 242.036 kb on - strand, within MMP_RS01280 at 242.042 kb on - strand, within MMP_RS01280 at 242.043 kb on + strand, within MMP_RS01280 at 242.043 kb on + strand, within MMP_RS01280 at 242.067 kb on + strand, within MMP_RS01280 at 242.067 kb on + strand, within MMP_RS01280 at 242.152 kb on - strand, within MMP_RS01280 at 242.230 kb on + strand, within MMP_RS01280 at 242.309 kb on - strand, within MMP_RS01280
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete no stress control remove 239,999 - -4.1 240,000 + -2.6 240,001 - -2.0 240,001 - -2.3 240,052 + MMP_RS01270 0.12 -2.9 240,132 - MMP_RS01270 0.19 -1.1 240,166 - MMP_RS01270 0.23 -1.9 240,167 + MMP_RS01270 0.23 -1.1 240,175 - MMP_RS01270 0.24 -1.7 240,208 - MMP_RS01270 0.27 -2.0 240,208 - MMP_RS01270 0.27 -3.9 240,208 - MMP_RS01270 0.27 -1.9 240,209 + MMP_RS01270 0.27 -2.2 240,212 - MMP_RS01270 0.27 -1.6 240,213 + MMP_RS01270 0.27 -2.2 240,213 + MMP_RS01270 0.27 -2.5 240,249 - MMP_RS01270 0.31 -1.4 240,250 + MMP_RS01270 0.31 -2.7 240,311 + MMP_RS01270 0.37 -2.2 240,354 - MMP_RS01270 0.41 -1.7 240,400 + MMP_RS01270 0.45 -1.9 240,415 + MMP_RS01270 0.47 -2.4 240,482 + MMP_RS01270 0.53 -1.1 240,484 - MMP_RS01270 0.53 -3.7 240,510 + MMP_RS01270 0.56 -2.4 240,514 + MMP_RS01270 0.56 -1.9 240,566 - MMP_RS01270 0.61 -2.7 240,601 + MMP_RS01270 0.64 -1.8 240,666 - MMP_RS01270 0.71 -1.9 240,683 + MMP_RS01270 0.72 -2.6 240,688 + MMP_RS01270 0.73 -2.2 240,705 - MMP_RS01270 0.74 -1.2 240,724 - MMP_RS01270 0.76 -1.3 240,884 + -2.2 240,884 + -1.2 240,934 + -1.2 240,969 + -0.9 241,047 + MMP_RS01275 0.19 -1.4 241,221 + MMP_RS01275 0.64 -2.3 241,232 - MMP_RS01275 0.67 -1.3 241,235 + MMP_RS01275 0.67 -2.8 241,243 + MMP_RS01275 0.69 -1.4 241,244 - MMP_RS01275 0.70 -1.3 241,383 + +1.3 241,400 - -0.8 241,407 - -1.0 241,408 + -0.6 241,414 + -1.6 241,429 - -1.8 241,429 - -1.9 241,429 - -1.9 241,430 + -0.4 241,430 + -1.3 241,431 - -2.0 241,435 - -1.0 241,451 - -1.9 241,465 + -1.4 241,486 - -2.6 241,502 - -2.2 241,502 - -1.4 241,511 + -1.1 241,691 + MMP_RS01280 0.18 -3.1 241,742 - MMP_RS01280 0.22 -2.0 241,743 + MMP_RS01280 0.22 -2.6 241,743 + MMP_RS01280 0.22 -2.2 241,755 - MMP_RS01280 0.23 -1.3 241,822 + MMP_RS01280 0.29 -2.0 241,829 - MMP_RS01280 0.30 -1.3 241,829 - MMP_RS01280 0.30 -2.4 241,832 + MMP_RS01280 0.30 -2.5 241,862 + MMP_RS01280 0.33 -1.5 241,862 + MMP_RS01280 0.33 -1.0 241,866 + MMP_RS01280 0.33 -2.0 241,874 - MMP_RS01280 0.34 -3.0 242,036 - MMP_RS01280 0.48 -1.9 242,042 - MMP_RS01280 0.48 -2.3 242,043 + MMP_RS01280 0.48 -2.3 242,043 + MMP_RS01280 0.48 -2.0 242,067 + MMP_RS01280 0.50 -1.3 242,067 + MMP_RS01280 0.50 -1.8 242,152 - MMP_RS01280 0.58 -1.5 242,230 + MMP_RS01280 0.65 -2.5 242,309 - MMP_RS01280 0.72 -2.9
Or see this region's nucleotide sequence