Experiment: McCas_H2_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00230 and MMP_RS00235 are separated by 10 nucleotides MMP_RS00235 and MMP_RS00240 are separated by 26 nucleotides MMP_RS00240 and MMP_RS00245 are separated by 4 nucleotides
MMP_RS00230: MMP_RS00230 - transcription factor E, at 53,793 to 54,350
_RS00230
MMP_RS00235: MMP_RS00235 - HDIG domain-containing protein, at 54,361 to 54,948
_RS00235
MMP_RS00240: MMP_RS00240 - type II secretion system F family protein, at 54,975 to 55,871
_RS00240
MMP_RS00245: MMP_RS00245 - type II secretion system F family protein, at 55,876 to 56,934
_RS00245
Position (kb) 54
55
56 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 54.016 kb on + strand at 54.054 kb on - strand at 54.055 kb on + strand at 54.140 kb on + strand at 54.155 kb on - strand at 54.225 kb on + strand at 54.252 kb on - strand at 54.253 kb on + strand at 54.307 kb on - strand at 54.342 kb on + strand at 54.345 kb on - strand at 54.345 kb on - strand at 54.345 kb on - strand at 54.360 kb on - strand at 54.361 kb on + strand at 54.367 kb on + strand at 54.386 kb on - strand at 54.386 kb on - strand at 54.396 kb on - strand at 54.402 kb on + strand at 54.402 kb on + strand at 54.402 kb on + strand at 54.441 kb on + strand, within MMP_RS00235 at 54.444 kb on - strand, within MMP_RS00235 at 54.551 kb on - strand, within MMP_RS00235 at 54.575 kb on - strand, within MMP_RS00235 at 54.647 kb on - strand, within MMP_RS00235 at 54.662 kb on - strand, within MMP_RS00235 at 54.666 kb on + strand, within MMP_RS00235 at 54.668 kb on - strand, within MMP_RS00235 at 54.692 kb on + strand, within MMP_RS00235 at 54.732 kb on - strand, within MMP_RS00235 at 54.772 kb on - strand, within MMP_RS00235 at 54.773 kb on + strand, within MMP_RS00235 at 54.821 kb on - strand, within MMP_RS00235 at 54.907 kb on - strand at 54.920 kb on - strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.931 kb on + strand at 54.936 kb on + strand at 54.947 kb on + strand at 54.947 kb on + strand at 54.977 kb on + strand at 54.977 kb on + strand at 54.984 kb on - strand at 54.996 kb on + strand at 55.005 kb on - strand at 55.005 kb on - strand at 55.041 kb on - strand at 55.042 kb on + strand at 55.052 kb on - strand at 55.057 kb on + strand at 55.065 kb on + strand, within MMP_RS00240 at 55.068 kb on - strand, within MMP_RS00240 at 55.150 kb on + strand, within MMP_RS00240 at 55.254 kb on - strand, within MMP_RS00240 at 55.290 kb on - strand, within MMP_RS00240 at 55.369 kb on - strand, within MMP_RS00240 at 55.410 kb on - strand, within MMP_RS00240 at 55.440 kb on - strand, within MMP_RS00240 at 55.440 kb on - strand, within MMP_RS00240 at 55.440 kb on - strand, within MMP_RS00240 at 55.441 kb on + strand, within MMP_RS00240 at 55.441 kb on + strand, within MMP_RS00240 at 55.441 kb on + strand, within MMP_RS00240 at 55.484 kb on - strand, within MMP_RS00240 at 55.504 kb on + strand, within MMP_RS00240 at 55.504 kb on + strand, within MMP_RS00240 at 55.530 kb on - strand, within MMP_RS00240 at 55.531 kb on + strand, within MMP_RS00240 at 55.591 kb on - strand, within MMP_RS00240 at 55.591 kb on - strand, within MMP_RS00240 at 55.592 kb on + strand, within MMP_RS00240 at 55.592 kb on + strand, within MMP_RS00240 at 55.601 kb on - strand, within MMP_RS00240 at 55.607 kb on - strand, within MMP_RS00240 at 55.639 kb on - strand, within MMP_RS00240 at 55.672 kb on + strand, within MMP_RS00240 at 55.678 kb on + strand, within MMP_RS00240 at 55.698 kb on + strand, within MMP_RS00240 at 55.831 kb on + strand at 55.840 kb on - strand at 55.840 kb on - strand at 55.840 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.842 kb on - strand at 55.843 kb on + strand at 55.844 kb on - strand at 55.844 kb on - strand at 55.844 kb on - strand at 55.844 kb on - strand at 55.845 kb on + strand at 55.851 kb on - strand at 55.852 kb on + strand at 55.855 kb on - strand at 55.906 kb on + strand at 55.906 kb on + strand at 55.909 kb on - strand at 56.151 kb on - strand, within MMP_RS00245 at 56.152 kb on + strand, within MMP_RS00245 at 56.193 kb on - strand, within MMP_RS00245 at 56.194 kb on + strand, within MMP_RS00245 at 56.194 kb on + strand, within MMP_RS00245 at 56.197 kb on - strand, within MMP_RS00245 at 56.198 kb on + strand, within MMP_RS00245 at 56.202 kb on - strand, within MMP_RS00245 at 56.242 kb on + strand, within MMP_RS00245 at 56.242 kb on + strand, within MMP_RS00245 at 56.266 kb on - strand, within MMP_RS00245 at 56.267 kb on + strand, within MMP_RS00245 at 56.268 kb on - strand, within MMP_RS00245 at 56.272 kb on + strand, within MMP_RS00245 at 56.356 kb on - strand, within MMP_RS00245 at 56.367 kb on - strand, within MMP_RS00245 at 56.374 kb on - strand, within MMP_RS00245 at 56.375 kb on + strand, within MMP_RS00245 at 56.375 kb on + strand, within MMP_RS00245 at 56.377 kb on - strand, within MMP_RS00245 at 56.443 kb on - strand, within MMP_RS00245 at 56.444 kb on + strand, within MMP_RS00245 at 56.461 kb on + strand, within MMP_RS00245 at 56.464 kb on + strand, within MMP_RS00245 at 56.501 kb on + strand, within MMP_RS00245 at 56.576 kb on - strand, within MMP_RS00245 at 56.577 kb on + strand, within MMP_RS00245 at 56.590 kb on - strand, within MMP_RS00245 at 56.591 kb on + strand, within MMP_RS00245 at 56.591 kb on + strand, within MMP_RS00245 at 56.595 kb on - strand, within MMP_RS00245 at 56.620 kb on + strand, within MMP_RS00245 at 56.644 kb on + strand, within MMP_RS00245 at 56.644 kb on + strand, within MMP_RS00245 at 56.651 kb on - strand, within MMP_RS00245 at 56.707 kb on - strand, within MMP_RS00245 at 56.708 kb on + strand, within MMP_RS00245 at 56.716 kb on - strand, within MMP_RS00245 at 56.717 kb on + strand, within MMP_RS00245 at 56.717 kb on + strand, within MMP_RS00245 at 56.725 kb on + strand, within MMP_RS00245 at 56.725 kb on + strand, within MMP_RS00245 at 56.728 kb on - strand, within MMP_RS00245 at 56.749 kb on + strand, within MMP_RS00245 at 56.749 kb on + strand, within MMP_RS00245 at 56.750 kb on - strand, within MMP_RS00245 at 56.751 kb on + strand, within MMP_RS00245 at 56.759 kb on - strand, within MMP_RS00245 at 56.760 kb on + strand, within MMP_RS00245 at 56.760 kb on + strand, within MMP_RS00245 at 56.768 kb on + strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.781 kb on - strand, within MMP_RS00245 at 56.782 kb on + strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.785 kb on - strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.786 kb on + strand, within MMP_RS00245 at 56.788 kb on + strand, within MMP_RS00245 at 56.822 kb on - strand, within MMP_RS00245 at 56.842 kb on + strand at 56.842 kb on + strand at 56.846 kb on + strand at 56.868 kb on - strand at 56.869 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete no stress control remove 54,016 + -2.8 54,054 - -1.7 54,055 + -0.4 54,140 + -2.4 54,155 - -2.0 54,225 + -3.0 54,252 - -1.1 54,253 + -3.5 54,307 - -1.1 54,342 + -0.9 54,345 - +1.6 54,345 - +0.8 54,345 - +2.1 54,360 - +0.9 54,361 + -1.5 54,367 + +1.2 54,386 - +1.8 54,386 - -2.5 54,396 - -0.6 54,402 + +0.9 54,402 + +0.5 54,402 + +0.2 54,441 + MMP_RS00235 0.14 -0.0 54,444 - MMP_RS00235 0.14 +1.1 54,551 - MMP_RS00235 0.32 +0.6 54,575 - MMP_RS00235 0.36 -0.3 54,647 - MMP_RS00235 0.49 -1.3 54,662 - MMP_RS00235 0.51 +2.8 54,666 + MMP_RS00235 0.52 +2.0 54,668 - MMP_RS00235 0.52 +1.0 54,692 + MMP_RS00235 0.56 +1.1 54,732 - MMP_RS00235 0.63 +0.0 54,772 - MMP_RS00235 0.70 -0.6 54,773 + MMP_RS00235 0.70 -0.8 54,821 - MMP_RS00235 0.78 +0.2 54,907 - -0.5 54,920 - -0.3 54,930 - +0.5 54,930 - -0.6 54,930 - -0.2 54,931 + -0.3 54,936 + -0.5 54,947 + +0.4 54,947 + +0.5 54,977 + +1.7 54,977 + +1.0 54,984 - -1.3 54,996 + -1.9 55,005 - -3.8 55,005 - -1.8 55,041 - -2.7 55,042 + -1.9 55,052 - -2.2 55,057 + -1.7 55,065 + MMP_RS00240 0.10 -2.4 55,068 - MMP_RS00240 0.10 -2.4 55,150 + MMP_RS00240 0.20 -3.4 55,254 - MMP_RS00240 0.31 -2.4 55,290 - MMP_RS00240 0.35 -2.5 55,369 - MMP_RS00240 0.44 -2.5 55,410 - MMP_RS00240 0.48 -3.5 55,440 - MMP_RS00240 0.52 -2.3 55,440 - MMP_RS00240 0.52 -1.5 55,440 - MMP_RS00240 0.52 -2.6 55,441 + MMP_RS00240 0.52 -2.9 55,441 + MMP_RS00240 0.52 -2.4 55,441 + MMP_RS00240 0.52 -2.2 55,484 - MMP_RS00240 0.57 -1.0 55,504 + MMP_RS00240 0.59 -1.2 55,504 + MMP_RS00240 0.59 -1.3 55,530 - MMP_RS00240 0.62 -1.7 55,531 + MMP_RS00240 0.62 -3.3 55,591 - MMP_RS00240 0.69 -2.2 55,591 - MMP_RS00240 0.69 -3.4 55,592 + MMP_RS00240 0.69 -1.8 55,592 + MMP_RS00240 0.69 -2.1 55,601 - MMP_RS00240 0.70 -2.1 55,607 - MMP_RS00240 0.70 -2.6 55,639 - MMP_RS00240 0.74 -2.1 55,672 + MMP_RS00240 0.78 -1.2 55,678 + MMP_RS00240 0.78 -4.2 55,698 + MMP_RS00240 0.81 -1.6 55,831 + -2.3 55,840 - -3.3 55,840 - -1.4 55,840 - -1.2 55,842 - -3.5 55,842 - -2.0 55,842 - -1.6 55,842 - -1.8 55,842 - -2.5 55,843 + -1.8 55,844 - -2.6 55,844 - -2.3 55,844 - -1.8 55,844 - -1.5 55,845 + -2.8 55,851 - -1.7 55,852 + -1.4 55,855 - -2.4 55,906 + -2.0 55,906 + -1.8 55,909 - -3.7 56,151 - MMP_RS00245 0.26 -2.6 56,152 + MMP_RS00245 0.26 -2.5 56,193 - MMP_RS00245 0.30 -2.1 56,194 + MMP_RS00245 0.30 -1.6 56,194 + MMP_RS00245 0.30 -1.9 56,197 - MMP_RS00245 0.30 -1.7 56,198 + MMP_RS00245 0.30 -2.6 56,202 - MMP_RS00245 0.31 -1.4 56,242 + MMP_RS00245 0.35 -1.9 56,242 + MMP_RS00245 0.35 -1.9 56,266 - MMP_RS00245 0.37 -1.1 56,267 + MMP_RS00245 0.37 -1.2 56,268 - MMP_RS00245 0.37 -2.1 56,272 + MMP_RS00245 0.37 -2.9 56,356 - MMP_RS00245 0.45 -1.6 56,367 - MMP_RS00245 0.46 -1.6 56,374 - MMP_RS00245 0.47 -1.6 56,375 + MMP_RS00245 0.47 -1.3 56,375 + MMP_RS00245 0.47 -2.2 56,377 - MMP_RS00245 0.47 -1.6 56,443 - MMP_RS00245 0.54 -1.4 56,444 + MMP_RS00245 0.54 -2.8 56,461 + MMP_RS00245 0.55 -2.1 56,464 + MMP_RS00245 0.56 -1.6 56,501 + MMP_RS00245 0.59 -4.1 56,576 - MMP_RS00245 0.66 -1.4 56,577 + MMP_RS00245 0.66 -1.3 56,590 - MMP_RS00245 0.67 -2.4 56,591 + MMP_RS00245 0.68 -1.9 56,591 + MMP_RS00245 0.68 -0.6 56,595 - MMP_RS00245 0.68 -1.4 56,620 + MMP_RS00245 0.70 -1.2 56,644 + MMP_RS00245 0.73 -0.9 56,644 + MMP_RS00245 0.73 -2.5 56,651 - MMP_RS00245 0.73 -1.7 56,707 - MMP_RS00245 0.78 -2.7 56,708 + MMP_RS00245 0.79 -1.7 56,716 - MMP_RS00245 0.79 -5.8 56,717 + MMP_RS00245 0.79 -1.6 56,717 + MMP_RS00245 0.79 -2.7 56,725 + MMP_RS00245 0.80 -2.4 56,725 + MMP_RS00245 0.80 -1.9 56,728 - MMP_RS00245 0.80 -1.2 56,749 + MMP_RS00245 0.82 -2.4 56,749 + MMP_RS00245 0.82 -1.3 56,750 - MMP_RS00245 0.83 -1.5 56,751 + MMP_RS00245 0.83 -3.0 56,759 - MMP_RS00245 0.83 -1.4 56,760 + MMP_RS00245 0.83 -3.1 56,760 + MMP_RS00245 0.83 -1.8 56,768 + MMP_RS00245 0.84 -3.4 56,781 - MMP_RS00245 0.85 -1.7 56,781 - MMP_RS00245 0.85 -2.8 56,781 - MMP_RS00245 0.85 -2.3 56,782 + MMP_RS00245 0.86 -2.1 56,785 - MMP_RS00245 0.86 -3.3 56,785 - MMP_RS00245 0.86 -1.5 56,785 - MMP_RS00245 0.86 -1.4 56,785 - MMP_RS00245 0.86 -1.9 56,786 + MMP_RS00245 0.86 -0.9 56,786 + MMP_RS00245 0.86 -2.3 56,786 + MMP_RS00245 0.86 -1.5 56,786 + MMP_RS00245 0.86 -2.8 56,788 + MMP_RS00245 0.86 -1.4 56,822 - MMP_RS00245 0.89 -2.1 56,842 + -2.0 56,842 + -2.3 56,846 + -1.8 56,868 - -3.9 56,869 + -1.8
Or see this region's nucleotide sequence