Experiment: McCas_H2_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04320 and MMP_RS04325 are separated by 123 nucleotides MMP_RS04325 and MMP_RS04330 are separated by 0 nucleotides
MMP_RS04320: MMP_RS04320 - uroporphyrinogen decarboxylase family protein, at 823,802 to 824,893
_RS04320
MMP_RS04325: MMP_RS04325 - MtaA/CmuA family methyltransferase, at 825,017 to 826,045
_RS04325
MMP_RS04330: MMP_RS04330 - ASKHA domain-containing protein, at 826,046 to 827,824
_RS04330
Position (kb) 825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 824.026 kb on + strand, within MMP_RS04320 at 824.078 kb on + strand, within MMP_RS04320 at 824.088 kb on - strand, within MMP_RS04320 at 824.224 kb on - strand, within MMP_RS04320 at 824.299 kb on + strand, within MMP_RS04320 at 824.320 kb on - strand, within MMP_RS04320 at 824.395 kb on - strand, within MMP_RS04320 at 824.428 kb on + strand, within MMP_RS04320 at 824.428 kb on + strand, within MMP_RS04320 at 824.428 kb on + strand, within MMP_RS04320 at 824.462 kb on - strand, within MMP_RS04320 at 824.462 kb on - strand, within MMP_RS04320 at 824.463 kb on + strand, within MMP_RS04320 at 824.466 kb on - strand, within MMP_RS04320 at 824.487 kb on - strand, within MMP_RS04320 at 824.487 kb on - strand, within MMP_RS04320 at 824.556 kb on - strand, within MMP_RS04320 at 824.569 kb on + strand, within MMP_RS04320 at 824.710 kb on - strand, within MMP_RS04320 at 824.711 kb on + strand, within MMP_RS04320 at 824.711 kb on + strand, within MMP_RS04320 at 824.865 kb on - strand at 824.984 kb on + strand at 824.986 kb on + strand at 825.084 kb on - strand at 825.085 kb on + strand at 825.106 kb on - strand at 825.142 kb on + strand, within MMP_RS04325 at 825.249 kb on - strand, within MMP_RS04325 at 825.249 kb on - strand, within MMP_RS04325 at 825.250 kb on + strand, within MMP_RS04325 at 825.310 kb on - strand, within MMP_RS04325 at 825.589 kb on + strand, within MMP_RS04325 at 825.589 kb on + strand, within MMP_RS04325 at 825.731 kb on + strand, within MMP_RS04325 at 825.731 kb on + strand, within MMP_RS04325 at 825.798 kb on - strand, within MMP_RS04325 at 825.814 kb on - strand, within MMP_RS04325 at 826.066 kb on - strand at 826.075 kb on - strand at 826.076 kb on + strand at 826.078 kb on - strand at 826.235 kb on - strand, within MMP_RS04330 at 826.314 kb on - strand, within MMP_RS04330 at 826.461 kb on - strand, within MMP_RS04330 at 826.558 kb on + strand, within MMP_RS04330 at 826.619 kb on + strand, within MMP_RS04330 at 826.630 kb on + strand, within MMP_RS04330 at 826.630 kb on + strand, within MMP_RS04330 at 826.630 kb on + strand, within MMP_RS04330 at 826.645 kb on - strand, within MMP_RS04330 at 826.683 kb on - strand, within MMP_RS04330 at 826.845 kb on + strand, within MMP_RS04330 at 826.926 kb on + strand, within MMP_RS04330 at 826.971 kb on - strand, within MMP_RS04330 at 826.981 kb on - strand, within MMP_RS04330 at 826.982 kb on + strand, within MMP_RS04330 at 827.030 kb on + strand, within MMP_RS04330 at 827.030 kb on + strand, within MMP_RS04330
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete nitrate 35.7142857142857 mM remove 824,026 + MMP_RS04320 0.21 -0.7 824,078 + MMP_RS04320 0.25 -1.0 824,088 - MMP_RS04320 0.26 +0.4 824,224 - MMP_RS04320 0.39 -1.1 824,299 + MMP_RS04320 0.46 -2.2 824,320 - MMP_RS04320 0.47 -1.0 824,395 - MMP_RS04320 0.54 +0.5 824,428 + MMP_RS04320 0.57 +0.4 824,428 + MMP_RS04320 0.57 +0.2 824,428 + MMP_RS04320 0.57 +0.6 824,462 - MMP_RS04320 0.60 +1.4 824,462 - MMP_RS04320 0.60 +0.8 824,463 + MMP_RS04320 0.61 -3.6 824,466 - MMP_RS04320 0.61 +1.0 824,487 - MMP_RS04320 0.63 +0.5 824,487 - MMP_RS04320 0.63 +1.4 824,556 - MMP_RS04320 0.69 +0.5 824,569 + MMP_RS04320 0.70 +1.7 824,710 - MMP_RS04320 0.83 +1.6 824,711 + MMP_RS04320 0.83 -1.7 824,711 + MMP_RS04320 0.83 -0.4 824,865 - +0.1 824,984 + -0.1 824,986 + +3.3 825,084 - -0.4 825,085 + -0.7 825,106 - +0.0 825,142 + MMP_RS04325 0.12 -1.1 825,249 - MMP_RS04325 0.23 -0.9 825,249 - MMP_RS04325 0.23 -0.2 825,250 + MMP_RS04325 0.23 +0.1 825,310 - MMP_RS04325 0.28 +0.0 825,589 + MMP_RS04325 0.56 -1.1 825,589 + MMP_RS04325 0.56 +0.7 825,731 + MMP_RS04325 0.69 +0.1 825,731 + MMP_RS04325 0.69 -1.6 825,798 - MMP_RS04325 0.76 -0.2 825,814 - MMP_RS04325 0.77 -1.4 826,066 - -0.6 826,075 - -0.9 826,076 + -1.0 826,078 - +0.3 826,235 - MMP_RS04330 0.11 +0.7 826,314 - MMP_RS04330 0.15 +0.2 826,461 - MMP_RS04330 0.23 -0.2 826,558 + MMP_RS04330 0.29 +2.2 826,619 + MMP_RS04330 0.32 -0.3 826,630 + MMP_RS04330 0.33 +0.8 826,630 + MMP_RS04330 0.33 -0.1 826,630 + MMP_RS04330 0.33 -0.6 826,645 - MMP_RS04330 0.34 -0.4 826,683 - MMP_RS04330 0.36 +0.7 826,845 + MMP_RS04330 0.45 -0.6 826,926 + MMP_RS04330 0.49 +0.4 826,971 - MMP_RS04330 0.52 -0.9 826,981 - MMP_RS04330 0.53 -2.3 826,982 + MMP_RS04330 0.53 +0.8 827,030 + MMP_RS04330 0.55 +0.3 827,030 + MMP_RS04330 0.55 +0.5
Or see this region's nucleotide sequence