Experiment: McCas_H2_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02575 and MMP_RS02580 are separated by 373 nucleotides MMP_RS02580 and MMP_RS02585 are separated by 230 nucleotides
MMP_RS02575: MMP_RS02575 - CAAX prenyl protease Rce1, at 481,669 to 482,484
_RS02575
MMP_RS02580: MMP_RS02580 - cupin domain-containing protein, at 482,858 to 483,295
_RS02580
MMP_RS02585: MMP_RS02585 - methyl-accepting chemotaxis protein, at 483,526 to 485,715
_RS02585
Position (kb) 482
483
484 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 481.882 kb on + strand, within MMP_RS02575 at 481.958 kb on - strand, within MMP_RS02575 at 481.958 kb on - strand, within MMP_RS02575 at 481.962 kb on + strand, within MMP_RS02575 at 481.974 kb on + strand, within MMP_RS02575 at 482.070 kb on + strand, within MMP_RS02575 at 482.154 kb on - strand, within MMP_RS02575 at 482.157 kb on + strand, within MMP_RS02575 at 482.249 kb on + strand, within MMP_RS02575 at 482.255 kb on - strand, within MMP_RS02575 at 482.293 kb on + strand, within MMP_RS02575 at 482.363 kb on - strand, within MMP_RS02575 at 482.378 kb on - strand, within MMP_RS02575 at 482.384 kb on - strand, within MMP_RS02575 at 482.384 kb on - strand, within MMP_RS02575 at 482.395 kb on + strand, within MMP_RS02575 at 482.405 kb on - strand at 482.439 kb on - strand at 482.443 kb on + strand at 482.449 kb on - strand at 482.450 kb on + strand at 482.505 kb on - strand at 482.512 kb on - strand at 482.544 kb on - strand at 482.677 kb on - strand at 482.756 kb on - strand at 482.756 kb on - strand at 482.756 kb on - strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.758 kb on - strand at 482.758 kb on - strand at 482.758 kb on - strand at 482.759 kb on + strand at 482.760 kb on - strand at 482.760 kb on - strand at 482.760 kb on - strand at 482.760 kb on - strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.762 kb on - strand at 482.762 kb on - strand at 482.762 kb on - strand at 482.824 kb on + strand at 482.864 kb on - strand at 482.896 kb on - strand at 482.897 kb on + strand at 482.897 kb on + strand at 482.897 kb on + strand at 482.897 kb on + strand at 482.936 kb on - strand, within MMP_RS02580 at 482.937 kb on + strand, within MMP_RS02580 at 482.959 kb on + strand, within MMP_RS02580 at 483.026 kb on + strand, within MMP_RS02580 at 483.031 kb on - strand, within MMP_RS02580 at 483.032 kb on + strand, within MMP_RS02580 at 483.152 kb on - strand, within MMP_RS02580 at 483.168 kb on - strand, within MMP_RS02580 at 483.169 kb on + strand, within MMP_RS02580 at 483.279 kb on + strand at 483.284 kb on + strand at 483.297 kb on - strand at 483.320 kb on - strand at 483.358 kb on - strand at 483.359 kb on + strand at 483.361 kb on + strand at 483.363 kb on - strand at 483.364 kb on + strand at 483.413 kb on - strand at 483.436 kb on - strand at 483.436 kb on - strand at 483.436 kb on - strand at 483.437 kb on + strand at 483.450 kb on + strand at 483.451 kb on - strand at 483.451 kb on - strand at 483.499 kb on - strand at 483.500 kb on + strand at 483.500 kb on + strand at 483.503 kb on + strand at 483.514 kb on - strand at 483.515 kb on + strand at 483.515 kb on + strand at 483.523 kb on - strand at 483.523 kb on - strand at 483.524 kb on + strand at 483.534 kb on + strand at 483.560 kb on - strand at 483.566 kb on - strand at 483.570 kb on - strand at 483.571 kb on + strand at 483.749 kb on - strand, within MMP_RS02585 at 483.749 kb on - strand, within MMP_RS02585 at 483.754 kb on + strand, within MMP_RS02585 at 483.849 kb on - strand, within MMP_RS02585 at 483.849 kb on - strand, within MMP_RS02585 at 483.867 kb on - strand, within MMP_RS02585 at 483.867 kb on - strand, within MMP_RS02585 at 483.868 kb on + strand, within MMP_RS02585 at 483.868 kb on + strand, within MMP_RS02585 at 483.868 kb on + strand, within MMP_RS02585 at 483.868 kb on + strand, within MMP_RS02585 at 483.871 kb on + strand, within MMP_RS02585 at 483.871 kb on + strand, within MMP_RS02585 at 483.871 kb on + strand, within MMP_RS02585 at 483.998 kb on - strand, within MMP_RS02585 at 484.002 kb on - strand, within MMP_RS02585 at 484.064 kb on - strand, within MMP_RS02585 at 484.239 kb on - strand, within MMP_RS02585 at 484.239 kb on - strand, within MMP_RS02585 at 484.241 kb on - strand, within MMP_RS02585 at 484.242 kb on + strand, within MMP_RS02585 at 484.262 kb on + strand, within MMP_RS02585
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete nitrate 35.7142857142857 mM remove 481,882 + MMP_RS02575 0.26 -0.9 481,958 - MMP_RS02575 0.35 -1.9 481,958 - MMP_RS02575 0.35 -2.1 481,962 + MMP_RS02575 0.36 -0.2 481,974 + MMP_RS02575 0.37 +1.7 482,070 + MMP_RS02575 0.49 +0.8 482,154 - MMP_RS02575 0.59 +1.0 482,157 + MMP_RS02575 0.60 -0.3 482,249 + MMP_RS02575 0.71 -4.1 482,255 - MMP_RS02575 0.72 -0.9 482,293 + MMP_RS02575 0.76 +7.3 482,363 - MMP_RS02575 0.85 -1.1 482,378 - MMP_RS02575 0.87 +0.2 482,384 - MMP_RS02575 0.88 +0.3 482,384 - MMP_RS02575 0.88 +1.3 482,395 + MMP_RS02575 0.89 +1.9 482,405 - -0.7 482,439 - +0.6 482,443 + +0.2 482,449 - +1.0 482,450 + -0.2 482,505 - -0.1 482,512 - -0.9 482,544 - +1.0 482,677 - +0.8 482,756 - -0.0 482,756 - -0.8 482,756 - -0.1 482,757 + +0.1 482,757 + +1.4 482,757 + +0.7 482,757 + +0.3 482,757 + -0.1 482,758 - -0.3 482,758 - -0.1 482,758 - -0.2 482,759 + +0.9 482,760 - -0.2 482,760 - -0.6 482,760 - -0.5 482,760 - -3.8 482,761 + +0.6 482,761 + +1.8 482,761 + -0.4 482,761 + -1.0 482,761 + +0.6 482,761 + -0.4 482,761 + -1.1 482,761 + -0.2 482,762 - -1.2 482,762 - -0.6 482,762 - -0.1 482,824 + +0.2 482,864 - -0.6 482,896 - -0.0 482,897 + +0.9 482,897 + +0.6 482,897 + +1.2 482,897 + +0.3 482,936 - MMP_RS02580 0.18 -1.1 482,937 + MMP_RS02580 0.18 -0.6 482,959 + MMP_RS02580 0.23 -0.5 483,026 + MMP_RS02580 0.38 +0.5 483,031 - MMP_RS02580 0.39 -1.3 483,032 + MMP_RS02580 0.40 +1.2 483,152 - MMP_RS02580 0.67 +0.1 483,168 - MMP_RS02580 0.71 -2.6 483,169 + MMP_RS02580 0.71 +0.0 483,279 + -0.3 483,284 + +2.3 483,297 - -0.1 483,320 - -0.4 483,358 - -0.9 483,359 + +0.2 483,361 + -2.0 483,363 - +0.2 483,364 + +1.3 483,413 - -0.6 483,436 - +1.2 483,436 - +0.2 483,436 - +0.1 483,437 + +0.1 483,450 + +0.4 483,451 - -1.1 483,451 - -0.4 483,499 - +0.5 483,500 + +0.6 483,500 + +0.7 483,503 + +0.0 483,514 - +0.1 483,515 + -0.9 483,515 + +0.5 483,523 - -0.8 483,523 - +0.7 483,524 + +1.1 483,534 + +1.3 483,560 - -0.7 483,566 - +0.3 483,570 - -0.4 483,571 + +0.6 483,749 - MMP_RS02585 0.10 +2.0 483,749 - MMP_RS02585 0.10 -0.9 483,754 + MMP_RS02585 0.10 +0.7 483,849 - MMP_RS02585 0.15 -0.5 483,849 - MMP_RS02585 0.15 +0.1 483,867 - MMP_RS02585 0.16 +1.8 483,867 - MMP_RS02585 0.16 -0.1 483,868 + MMP_RS02585 0.16 +0.6 483,868 + MMP_RS02585 0.16 -0.8 483,868 + MMP_RS02585 0.16 -1.0 483,868 + MMP_RS02585 0.16 -1.0 483,871 + MMP_RS02585 0.16 -0.7 483,871 + MMP_RS02585 0.16 +1.4 483,871 + MMP_RS02585 0.16 +0.3 483,998 - MMP_RS02585 0.22 +0.0 484,002 - MMP_RS02585 0.22 +0.5 484,064 - MMP_RS02585 0.25 -0.3 484,239 - MMP_RS02585 0.33 -0.3 484,239 - MMP_RS02585 0.33 +0.3 484,241 - MMP_RS02585 0.33 -0.3 484,242 + MMP_RS02585 0.33 -0.8 484,262 + MMP_RS02585 0.34 -0.6
Or see this region's nucleotide sequence