Experiment: McCas_H2_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01290 and MMP_RS01295 overlap by 23 nucleotides MMP_RS01295 and MMP_RS01300 are separated by 51 nucleotides MMP_RS01300 and MMP_RS01305 are separated by 1 nucleotides MMP_RS01305 and MMP_RS01310 overlap by 20 nucleotides MMP_RS01310 and MMP_RS01315 are separated by 3 nucleotides
MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960
_RS01290
MMP_RS01295: MMP_RS01295 - hypothetical protein, at 243,938 to 244,393
_RS01295
MMP_RS01300: MMP_RS01300 - hypothetical protein, at 244,445 to 244,930
_RS01300
MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789
_RS01305
MMP_RS01310: MMP_RS01310 - hypothetical protein, at 245,770 to 246,333
_RS01310
MMP_RS01315: MMP_RS01315 - DUF2341 domain-containing protein, at 246,337 to 248,100
_RS01315
Position (kb) 244
245
246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 243.999 kb on - strand, within MMP_RS01295 at 244.000 kb on + strand, within MMP_RS01295 at 244.131 kb on + strand, within MMP_RS01295 at 244.185 kb on + strand, within MMP_RS01295 at 244.189 kb on - strand, within MMP_RS01295 at 244.189 kb on - strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.191 kb on - strand, within MMP_RS01295 at 244.214 kb on + strand, within MMP_RS01295 at 244.229 kb on + strand, within MMP_RS01295 at 244.288 kb on - strand, within MMP_RS01295 at 244.313 kb on + strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.337 kb on + strand, within MMP_RS01295 at 244.337 kb on + strand, within MMP_RS01295 at 244.381 kb on - strand at 244.407 kb on + strand at 244.414 kb on + strand at 244.439 kb on - strand at 244.441 kb on - strand at 244.471 kb on - strand at 244.472 kb on + strand at 244.491 kb on - strand at 244.534 kb on + strand, within MMP_RS01300 at 244.588 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.607 kb on + strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.614 kb on - strand, within MMP_RS01300 at 244.614 kb on - strand, within MMP_RS01300 at 244.615 kb on + strand, within MMP_RS01300 at 244.615 kb on + strand, within MMP_RS01300 at 244.623 kb on + strand, within MMP_RS01300 at 244.623 kb on + strand, within MMP_RS01300 at 244.653 kb on - strand, within MMP_RS01300 at 244.653 kb on - strand, within MMP_RS01300 at 244.664 kb on + strand, within MMP_RS01300 at 244.664 kb on + strand, within MMP_RS01300 at 244.667 kb on - strand, within MMP_RS01300 at 244.733 kb on + strand, within MMP_RS01300 at 244.735 kb on - strand, within MMP_RS01300 at 244.735 kb on - strand, within MMP_RS01300 at 244.742 kb on + strand, within MMP_RS01300 at 244.798 kb on - strand, within MMP_RS01300 at 244.798 kb on - strand, within MMP_RS01300 at 244.799 kb on + strand, within MMP_RS01300 at 244.980 kb on - strand at 245.022 kb on - strand, within MMP_RS01305 at 245.133 kb on - strand, within MMP_RS01305 at 245.151 kb on - strand, within MMP_RS01305 at 245.154 kb on - strand, within MMP_RS01305 at 245.154 kb on - strand, within MMP_RS01305 at 245.154 kb on - strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.155 kb on + strand, within MMP_RS01305 at 245.203 kb on + strand, within MMP_RS01305 at 245.203 kb on + strand, within MMP_RS01305 at 245.242 kb on - strand, within MMP_RS01305 at 245.248 kb on + strand, within MMP_RS01305 at 245.253 kb on + strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.266 kb on - strand, within MMP_RS01305 at 245.267 kb on + strand, within MMP_RS01305 at 245.271 kb on - strand, within MMP_RS01305 at 245.274 kb on - strand, within MMP_RS01305 at 245.293 kb on + strand, within MMP_RS01305 at 245.297 kb on - strand, within MMP_RS01305 at 245.298 kb on + strand, within MMP_RS01305 at 245.298 kb on + strand, within MMP_RS01305 at 245.339 kb on - strand, within MMP_RS01305 at 245.435 kb on - strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.436 kb on + strand, within MMP_RS01305 at 245.509 kb on - strand, within MMP_RS01305 at 245.560 kb on - strand, within MMP_RS01305 at 245.560 kb on - strand, within MMP_RS01305 at 245.561 kb on + strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.621 kb on - strand, within MMP_RS01305 at 245.622 kb on + strand, within MMP_RS01305 at 245.625 kb on - strand, within MMP_RS01305 at 245.625 kb on - strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.626 kb on + strand, within MMP_RS01305 at 245.701 kb on - strand, within MMP_RS01305 at 245.706 kb on + strand at 245.706 kb on + strand at 245.710 kb on + strand at 245.720 kb on - strand at 245.754 kb on - strand at 245.754 kb on - strand at 245.761 kb on - strand at 245.822 kb on - strand at 245.822 kb on - strand at 245.823 kb on + strand at 245.861 kb on + strand, within MMP_RS01310 at 245.893 kb on - strand, within MMP_RS01310 at 245.894 kb on + strand, within MMP_RS01310 at 245.894 kb on + strand, within MMP_RS01310 at 245.901 kb on - strand, within MMP_RS01310 at 245.902 kb on + strand, within MMP_RS01310 at 245.902 kb on + strand, within MMP_RS01310 at 245.905 kb on + strand, within MMP_RS01310 at 245.906 kb on - strand, within MMP_RS01310 at 245.907 kb on + strand, within MMP_RS01310 at 245.929 kb on + strand, within MMP_RS01310 at 245.933 kb on - strand, within MMP_RS01310 at 245.934 kb on + strand, within MMP_RS01310 at 245.945 kb on - strand, within MMP_RS01310 at 245.946 kb on + strand, within MMP_RS01310 at 245.971 kb on + strand, within MMP_RS01310 at 245.991 kb on - strand, within MMP_RS01310 at 245.998 kb on + strand, within MMP_RS01310 at 246.052 kb on + strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.055 kb on - strand, within MMP_RS01310 at 246.056 kb on + strand, within MMP_RS01310 at 246.060 kb on + strand, within MMP_RS01310 at 246.124 kb on + strand, within MMP_RS01310 at 246.136 kb on + strand, within MMP_RS01310 at 246.157 kb on - strand, within MMP_RS01310 at 246.233 kb on + strand, within MMP_RS01310 at 246.281 kb on + strand at 246.300 kb on - strand at 246.314 kb on - strand at 246.314 kb on - strand at 246.359 kb on - strand at 246.403 kb on + strand at 246.403 kb on + strand at 246.403 kb on + strand at 246.410 kb on - strand at 246.411 kb on + strand at 246.416 kb on - strand at 246.517 kb on + strand, within MMP_RS01315 at 246.520 kb on + strand, within MMP_RS01315 at 246.527 kb on - strand, within MMP_RS01315 at 246.566 kb on + strand, within MMP_RS01315 at 246.604 kb on - strand, within MMP_RS01315 at 246.643 kb on + strand, within MMP_RS01315 at 246.644 kb on - strand, within MMP_RS01315 at 246.702 kb on - strand, within MMP_RS01315 at 246.703 kb on + strand, within MMP_RS01315 at 246.720 kb on - strand, within MMP_RS01315 at 246.720 kb on - strand, within MMP_RS01315 at 246.736 kb on - strand, within MMP_RS01315 at 246.743 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.751 kb on - strand, within MMP_RS01315 at 246.752 kb on + strand, within MMP_RS01315 at 246.752 kb on + strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.770 kb on - strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.771 kb on + strand, within MMP_RS01315 at 246.772 kb on - strand, within MMP_RS01315 at 246.772 kb on - strand, within MMP_RS01315
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete no stress control remove 243,999 - MMP_RS01295 0.13 -2.1 244,000 + MMP_RS01295 0.14 -1.1 244,131 + MMP_RS01295 0.42 -2.0 244,185 + MMP_RS01295 0.54 -1.1 244,189 - MMP_RS01295 0.55 -1.0 244,189 - MMP_RS01295 0.55 -1.7 244,190 + MMP_RS01295 0.55 -1.1 244,190 + MMP_RS01295 0.55 -2.6 244,190 + MMP_RS01295 0.55 -0.5 244,191 - MMP_RS01295 0.55 -1.6 244,214 + MMP_RS01295 0.61 -2.2 244,229 + MMP_RS01295 0.64 -2.6 244,288 - MMP_RS01295 0.77 -2.3 244,313 + MMP_RS01295 0.82 -2.2 244,336 - MMP_RS01295 0.87 -2.1 244,336 - MMP_RS01295 0.87 -1.4 244,336 - MMP_RS01295 0.87 -3.1 244,336 - MMP_RS01295 0.87 -1.6 244,336 - MMP_RS01295 0.87 -3.9 244,337 + MMP_RS01295 0.88 -1.2 244,337 + MMP_RS01295 0.88 -1.7 244,381 - -0.3 244,407 + -0.6 244,414 + +1.8 244,439 - +0.0 244,441 - +1.0 244,471 - -0.2 244,472 + -1.6 244,491 - +0.2 244,534 + MMP_RS01300 0.18 +0.6 244,588 - MMP_RS01300 0.29 -0.3 244,606 - MMP_RS01300 0.33 +0.9 244,606 - MMP_RS01300 0.33 +0.3 244,606 - MMP_RS01300 0.33 -1.0 244,606 - MMP_RS01300 0.33 +0.4 244,606 - MMP_RS01300 0.33 -0.0 244,606 - MMP_RS01300 0.33 -0.0 244,607 + MMP_RS01300 0.33 -0.4 244,610 - MMP_RS01300 0.34 -0.3 244,610 - MMP_RS01300 0.34 +0.1 244,610 - MMP_RS01300 0.34 -0.4 244,610 - MMP_RS01300 0.34 +0.3 244,610 - MMP_RS01300 0.34 +0.1 244,610 - MMP_RS01300 0.34 +0.4 244,610 - MMP_RS01300 0.34 -0.6 244,610 - MMP_RS01300 0.34 +0.9 244,611 + MMP_RS01300 0.34 -0.6 244,611 + MMP_RS01300 0.34 +1.4 244,611 + MMP_RS01300 0.34 +2.2 244,612 - MMP_RS01300 0.34 -1.0 244,612 - MMP_RS01300 0.34 +0.1 244,612 - MMP_RS01300 0.34 +0.7 244,612 - MMP_RS01300 0.34 -1.6 244,612 - MMP_RS01300 0.34 -0.1 244,613 + MMP_RS01300 0.35 +0.9 244,613 + MMP_RS01300 0.35 +0.5 244,613 + MMP_RS01300 0.35 +0.3 244,614 - MMP_RS01300 0.35 -0.7 244,614 - MMP_RS01300 0.35 +0.1 244,615 + MMP_RS01300 0.35 -0.2 244,615 + MMP_RS01300 0.35 +0.5 244,623 + MMP_RS01300 0.37 +0.8 244,623 + MMP_RS01300 0.37 +0.5 244,653 - MMP_RS01300 0.43 +0.5 244,653 - MMP_RS01300 0.43 -0.4 244,664 + MMP_RS01300 0.45 +2.0 244,664 + MMP_RS01300 0.45 -0.2 244,667 - MMP_RS01300 0.46 -0.2 244,733 + MMP_RS01300 0.59 +1.2 244,735 - MMP_RS01300 0.60 -0.1 244,735 - MMP_RS01300 0.60 +0.0 244,742 + MMP_RS01300 0.61 -1.3 244,798 - MMP_RS01300 0.73 +0.0 244,798 - MMP_RS01300 0.73 +1.0 244,799 + MMP_RS01300 0.73 -0.4 244,980 - -0.9 245,022 - MMP_RS01305 0.10 -2.0 245,133 - MMP_RS01305 0.23 -1.7 245,151 - MMP_RS01305 0.26 -1.2 245,154 - MMP_RS01305 0.26 -1.9 245,154 - MMP_RS01305 0.26 -1.2 245,154 - MMP_RS01305 0.26 -0.7 245,155 + MMP_RS01305 0.26 -0.9 245,155 + MMP_RS01305 0.26 -1.1 245,155 + MMP_RS01305 0.26 -0.9 245,155 + MMP_RS01305 0.26 -1.8 245,203 + MMP_RS01305 0.32 -3.0 245,203 + MMP_RS01305 0.32 -1.7 245,242 - MMP_RS01305 0.36 -0.9 245,248 + MMP_RS01305 0.37 -0.9 245,253 + MMP_RS01305 0.37 -2.3 245,266 - MMP_RS01305 0.39 -0.4 245,266 - MMP_RS01305 0.39 -1.1 245,266 - MMP_RS01305 0.39 -1.8 245,266 - MMP_RS01305 0.39 -1.1 245,267 + MMP_RS01305 0.39 -1.3 245,271 - MMP_RS01305 0.40 -1.6 245,274 - MMP_RS01305 0.40 -1.3 245,293 + MMP_RS01305 0.42 -1.7 245,297 - MMP_RS01305 0.43 -1.2 245,298 + MMP_RS01305 0.43 -1.1 245,298 + MMP_RS01305 0.43 -1.4 245,339 - MMP_RS01305 0.47 -1.9 245,435 - MMP_RS01305 0.59 -2.0 245,436 + MMP_RS01305 0.59 -1.4 245,436 + MMP_RS01305 0.59 -2.0 245,436 + MMP_RS01305 0.59 -0.2 245,436 + MMP_RS01305 0.59 -2.3 245,509 - MMP_RS01305 0.67 -1.7 245,560 - MMP_RS01305 0.73 -1.3 245,560 - MMP_RS01305 0.73 -2.0 245,561 + MMP_RS01305 0.73 -1.0 245,621 - MMP_RS01305 0.80 -1.4 245,621 - MMP_RS01305 0.80 -1.2 245,621 - MMP_RS01305 0.80 -1.9 245,621 - MMP_RS01305 0.80 -1.4 245,622 + MMP_RS01305 0.80 -0.3 245,625 - MMP_RS01305 0.81 -1.2 245,625 - MMP_RS01305 0.81 -1.4 245,626 + MMP_RS01305 0.81 -1.3 245,626 + MMP_RS01305 0.81 -2.4 245,626 + MMP_RS01305 0.81 -1.6 245,626 + MMP_RS01305 0.81 -0.9 245,701 - MMP_RS01305 0.90 -3.0 245,706 + -2.9 245,706 + -1.7 245,710 + -1.4 245,720 - -1.3 245,754 - -1.6 245,754 - -0.2 245,761 - -0.3 245,822 - -1.6 245,822 - -1.8 245,823 + -1.9 245,861 + MMP_RS01310 0.16 -1.2 245,893 - MMP_RS01310 0.22 -1.3 245,894 + MMP_RS01310 0.22 -1.1 245,894 + MMP_RS01310 0.22 -2.3 245,901 - MMP_RS01310 0.23 -1.5 245,902 + MMP_RS01310 0.23 -1.3 245,902 + MMP_RS01310 0.23 -1.7 245,905 + MMP_RS01310 0.24 -2.0 245,906 - MMP_RS01310 0.24 -2.2 245,907 + MMP_RS01310 0.24 -1.6 245,929 + MMP_RS01310 0.28 -0.7 245,933 - MMP_RS01310 0.29 -1.6 245,934 + MMP_RS01310 0.29 -1.3 245,945 - MMP_RS01310 0.31 -1.8 245,946 + MMP_RS01310 0.31 -2.3 245,971 + MMP_RS01310 0.36 -0.7 245,991 - MMP_RS01310 0.39 -2.7 245,998 + MMP_RS01310 0.40 -1.4 246,052 + MMP_RS01310 0.50 -3.4 246,055 - MMP_RS01310 0.51 -2.8 246,055 - MMP_RS01310 0.51 -0.9 246,055 - MMP_RS01310 0.51 -2.6 246,056 + MMP_RS01310 0.51 -0.4 246,060 + MMP_RS01310 0.51 -1.1 246,124 + MMP_RS01310 0.63 -2.8 246,136 + MMP_RS01310 0.65 -1.7 246,157 - MMP_RS01310 0.69 -2.6 246,233 + MMP_RS01310 0.82 -1.5 246,281 + -0.9 246,300 - -2.1 246,314 - -0.7 246,314 - -0.3 246,359 - -1.6 246,403 + -1.6 246,403 + -1.8 246,403 + -1.7 246,410 - -2.1 246,411 + -1.6 246,416 - -1.8 246,517 + MMP_RS01315 0.10 -1.8 246,520 + MMP_RS01315 0.10 -1.7 246,527 - MMP_RS01315 0.11 -1.3 246,566 + MMP_RS01315 0.13 -1.1 246,604 - MMP_RS01315 0.15 -2.9 246,643 + MMP_RS01315 0.17 -2.1 246,644 - MMP_RS01315 0.17 -3.2 246,702 - MMP_RS01315 0.21 -1.6 246,703 + MMP_RS01315 0.21 -1.6 246,720 - MMP_RS01315 0.22 +0.1 246,720 - MMP_RS01315 0.22 -2.3 246,736 - MMP_RS01315 0.23 -1.7 246,743 - MMP_RS01315 0.23 -1.7 246,751 - MMP_RS01315 0.23 -1.8 246,751 - MMP_RS01315 0.23 -1.9 246,751 - MMP_RS01315 0.23 -1.4 246,752 + MMP_RS01315 0.24 -1.7 246,752 + MMP_RS01315 0.24 -1.8 246,770 - MMP_RS01315 0.25 -2.0 246,770 - MMP_RS01315 0.25 -0.8 246,770 - MMP_RS01315 0.25 -1.5 246,771 + MMP_RS01315 0.25 -1.7 246,771 + MMP_RS01315 0.25 -1.4 246,771 + MMP_RS01315 0.25 -0.7 246,772 - MMP_RS01315 0.25 -1.4 246,772 - MMP_RS01315 0.25 -0.9
Or see this region's nucleotide sequence