Experiment: McCas_H2_complete Cesium chloride 41.6666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00775 and MMP_RS00780 are separated by 17 nucleotides MMP_RS00780 and MMP_RS00785 are separated by 56 nucleotides MMP_RS00785 and MMP_RS00795 are separated by 626 nucleotides
MMP_RS00775: MMP_RS00775 - threonine synthase, at 141,612 to 142,826
_RS00775
MMP_RS00780: MMP_RS00780 - 3-isopropylmalate dehydratase small subunit, at 142,844 to 143,347
_RS00780
MMP_RS00785: MMP_RS00785 - deoxyhypusine synthase, at 143,404 to 144,411
_RS00785
MMP_RS00795: MMP_RS00795 - formate dehydrogenase H subunit alpha selenocysteine-containing, at 145,038 to 147,068
_RS00795
Position (kb)
143
144
145 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 142.920 kb on + strand at 142.928 kb on - strand at 142.928 kb on - strand at 142.930 kb on - strand at 142.931 kb on + strand at 143.080 kb on + strand at 143.430 kb on - strand at 143.606 kb on - strand at 143.624 kb on + strand at 143.668 kb on - strand at 143.825 kb on + strand at 143.839 kb on + strand at 143.842 kb on - strand at 143.842 kb on - strand at 143.843 kb on + strand at 143.843 kb on + strand at 143.843 kb on + strand at 143.846 kb on - strand at 143.847 kb on + strand at 143.860 kb on - strand at 143.860 kb on - strand at 143.860 kb on - strand at 143.861 kb on + strand at 143.861 kb on + strand at 143.868 kb on - strand at 143.915 kb on - strand at 144.007 kb on - strand at 144.007 kb on - strand at 144.016 kb on + strand at 144.016 kb on + strand at 144.064 kb on + strand at 144.131 kb on - strand at 144.253 kb on - strand at 144.253 kb on - strand at 144.254 kb on + strand at 144.406 kb on + strand at 144.511 kb on + strand at 144.537 kb on - strand at 144.537 kb on - strand at 144.709 kb on - strand at 144.899 kb on - strand at 144.960 kb on + strand at 145.061 kb on - strand at 145.066 kb on - strand at 145.066 kb on - strand at 145.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Cesium chloride 41.6666666666667 mM remove 142,920 + -2.6 142,928 - +0.8 142,928 - +0.6 142,930 - -3.1 142,931 + +1.0 143,080 + -1.5 143,430 - -1.4 143,606 - -2.4 143,624 + -1.9 143,668 - -1.8 143,825 + -1.4 143,839 + -0.9 143,842 - +0.1 143,842 - -2.0 143,843 + -0.3 143,843 + -1.5 143,843 + -3.0 143,846 - -1.0 143,847 + -1.0 143,860 - -0.1 143,860 - +0.5 143,860 - +0.6 143,861 + +1.8 143,861 + +0.3 143,868 - -1.0 143,915 - -1.2 144,007 - -1.4 144,007 - -2.0 144,016 + -1.5 144,016 + +0.4 144,064 + -0.6 144,131 - -0.1 144,253 - -0.5 144,253 - -3.5 144,254 + -0.8 144,406 + +0.5 144,511 + +0.2 144,537 - +0.9 144,537 - -0.1 144,709 - -0.1 144,899 - +1.3 144,960 + +4.0 145,061 - -0.0 145,066 - +0.3 145,066 - +0.3 145,105 - +0.2
Or see this region's nucleotide sequence