Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00360

Experiment: McCas_H2_complete Cesium chloride 41.6666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00350 and MMP_RS00355 are separated by 18 nucleotidesMMP_RS00355 and MMP_RS00360 are separated by 36 nucleotidesMMP_RS00360 and MMP_RS00365 are separated by 94 nucleotides MMP_RS00350: MMP_RS00350 - 50S ribosomal protein L18a, at 74,160 to 74,390 _RS00350 MMP_RS00355: MMP_RS00355 - translation initiation factor IF-6, at 74,409 to 75,092 _RS00355 MMP_RS00360: MMP_RS00360 - 50S ribosomal protein L31e, at 75,129 to 75,380 _RS00360 MMP_RS00365: MMP_RS00365 - acetylglutamate kinase, at 75,475 to 76,359 _RS00365 Position (kb) 75 76Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 74.688 kb on - strandat 74.763 kb on - strandat 75.135 kb on - strandat 75.783 kb on + strandat 75.962 kb on - strandat 75.968 kb on - strandat 76.097 kb on - strandat 76.350 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Cesium chloride 41.6666666666667 mM
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74,688 - -3.8
74,763 - -2.3
75,135 - -1.6
75,783 + -4.3
75,962 - -0.6
75,968 - +1.1
76,097 - -3.1
76,350 + -1.3

Or see this region's nucleotide sequence