Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08500

Experiment: McCas_H2_complete rubidium chloride 125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS09065 and MMP_RS08500 are separated by 1 nucleotidesMMP_RS08500 and MMP_RS08505 are separated by 114 nucleotidesMMP_RS08505 and MMP_RS08510 are separated by 29 nucleotidesMMP_RS08510 and MMP_RS08515 are separated by 13 nucleotidesMMP_RS08515 and MMP_RS08520 are separated by 14 nucleotidesMMP_RS08520 and MMP_RS08525 are separated by 38 nucleotidesMMP_RS08525 and MMP_RS08530 are separated by 116 nucleotidesMMP_RS08530 and MMP_RS08535 are separated by 122 nucleotides MMP_RS09065: MMP_RS09065 - hypothetical protein, at 1,598,443 to 1,600,218 _RS09065 MMP_RS08500: MMP_RS08500 - pyridoxal 5'-phosphate synthase glutaminase subunit PdxT, at 1,600,220 to 1,600,783 _RS08500 MMP_RS08505: MMP_RS08505 - tRNA-His, at 1,600,898 to 1,600,972 _RS08505 MMP_RS08510: MMP_RS08510 - tRNA-Leu, at 1,601,002 to 1,601,086 _RS08510 MMP_RS08515: MMP_RS08515 - tRNA-Glu, at 1,601,100 to 1,601,174 _RS08515 MMP_RS08520: MMP_RS08520 - tRNA-Ile, at 1,601,189 to 1,601,263 _RS08520 MMP_RS08525: MMP_RS08525 - tRNA-Asn, at 1,601,302 to 1,601,378 _RS08525 MMP_RS08530: MMP_RS08530 - tRNA-Phe, at 1,601,495 to 1,601,568 _RS08530 MMP_RS08535: MMP_RS08535 - bis-aminopropyl spermidine synthase family protein, at 1,601,691 to 1,602,863 _RS08535 Position (kb) 1600 1601Strain fitness (log2 ratio) -2 -1 0 1 2at 1599.284 kb on - strand, within MMP_RS09065at 1599.285 kb on + strand, within MMP_RS09065at 1599.285 kb on + strand, within MMP_RS09065at 1599.285 kb on + strand, within MMP_RS09065at 1599.296 kb on - strand, within MMP_RS09065at 1599.363 kb on - strand, within MMP_RS09065at 1599.437 kb on - strand, within MMP_RS09065at 1599.437 kb on - strand, within MMP_RS09065at 1599.437 kb on - strand, within MMP_RS09065at 1599.443 kb on + strand, within MMP_RS09065at 1599.449 kb on - strand, within MMP_RS09065at 1599.475 kb on - strand, within MMP_RS09065at 1599.546 kb on - strand, within MMP_RS09065at 1599.597 kb on - strand, within MMP_RS09065at 1599.597 kb on - strand, within MMP_RS09065at 1599.597 kb on - strand, within MMP_RS09065at 1599.598 kb on + strand, within MMP_RS09065at 1599.608 kb on + strand, within MMP_RS09065at 1599.608 kb on + strand, within MMP_RS09065at 1599.640 kb on + strand, within MMP_RS09065at 1599.684 kb on + strand, within MMP_RS09065at 1599.688 kb on - strand, within MMP_RS09065at 1599.689 kb on + strand, within MMP_RS09065at 1599.690 kb on - strand, within MMP_RS09065at 1599.690 kb on - strand, within MMP_RS09065at 1599.690 kb on - strand, within MMP_RS09065at 1599.691 kb on + strand, within MMP_RS09065at 1599.723 kb on - strand, within MMP_RS09065at 1599.778 kb on - strand, within MMP_RS09065at 1599.860 kb on - strand, within MMP_RS09065at 1599.860 kb on - strand, within MMP_RS09065at 1600.114 kb on - strandat 1600.114 kb on - strandat 1600.119 kb on + strandat 1600.159 kb on - strandat 1600.163 kb on - strandat 1600.251 kb on - strandat 1600.258 kb on + strandat 1600.258 kb on + strandat 1600.307 kb on - strand, within MMP_RS08500at 1600.309 kb on - strand, within MMP_RS08500at 1600.334 kb on + strand, within MMP_RS08500at 1600.406 kb on - strand, within MMP_RS08500at 1600.436 kb on - strand, within MMP_RS08500at 1600.614 kb on + strand, within MMP_RS08500at 1600.808 kb on - strandat 1600.813 kb on + strandat 1600.824 kb on - strandat 1601.630 kb on - strandat 1601.633 kb on - strandat 1601.634 kb on + strandat 1601.650 kb on - strandat 1601.651 kb on + strandat 1601.655 kb on - strandat 1601.656 kb on + strandat 1601.658 kb on - strandat 1601.667 kb on + strandat 1601.671 kb on - strandat 1601.672 kb on + strandat 1601.672 kb on + strandat 1601.675 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete rubidium chloride 125 mM
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1,599,284 - MMP_RS09065 0.47 +0.3
1,599,285 + MMP_RS09065 0.47 +1.2
1,599,285 + MMP_RS09065 0.47 -1.0
1,599,285 + MMP_RS09065 0.47 +0.9
1,599,296 - MMP_RS09065 0.48 +0.4
1,599,363 - MMP_RS09065 0.52 +1.2
1,599,437 - MMP_RS09065 0.56 +0.6
1,599,437 - MMP_RS09065 0.56 -0.9
1,599,437 - MMP_RS09065 0.56 +0.7
1,599,443 + MMP_RS09065 0.56 +1.2
1,599,449 - MMP_RS09065 0.57 +1.0
1,599,475 - MMP_RS09065 0.58 +0.1
1,599,546 - MMP_RS09065 0.62 +1.0
1,599,597 - MMP_RS09065 0.65 +0.3
1,599,597 - MMP_RS09065 0.65 +0.6
1,599,597 - MMP_RS09065 0.65 -1.4
1,599,598 + MMP_RS09065 0.65 -0.9
1,599,608 + MMP_RS09065 0.66 -0.2
1,599,608 + MMP_RS09065 0.66 -0.4
1,599,640 + MMP_RS09065 0.67 +0.9
1,599,684 + MMP_RS09065 0.70 +0.7
1,599,688 - MMP_RS09065 0.70 -0.1
1,599,689 + MMP_RS09065 0.70 +0.4
1,599,690 - MMP_RS09065 0.70 +0.4
1,599,690 - MMP_RS09065 0.70 -0.0
1,599,690 - MMP_RS09065 0.70 +0.1
1,599,691 + MMP_RS09065 0.70 +0.1
1,599,723 - MMP_RS09065 0.72 +1.0
1,599,778 - MMP_RS09065 0.75 +0.5
1,599,860 - MMP_RS09065 0.80 -0.3
1,599,860 - MMP_RS09065 0.80 +0.2
1,600,114 - +0.2
1,600,114 - -0.0
1,600,119 + +0.5
1,600,159 - +0.7
1,600,163 - -0.8
1,600,251 - +0.4
1,600,258 + +0.2
1,600,258 + -0.3
1,600,307 - MMP_RS08500 0.15 -0.6
1,600,309 - MMP_RS08500 0.16 +0.8
1,600,334 + MMP_RS08500 0.20 -0.6
1,600,406 - MMP_RS08500 0.33 -0.7
1,600,436 - MMP_RS08500 0.38 -1.6
1,600,614 + MMP_RS08500 0.70 -0.3
1,600,808 - -2.0
1,600,813 + -0.4
1,600,824 - -0.2
1,601,630 - -0.5
1,601,633 - +0.6
1,601,634 + +1.3
1,601,650 - +1.0
1,601,651 + +0.0
1,601,655 - +2.1
1,601,656 + -0.5
1,601,658 - -0.2
1,601,667 + +0.3
1,601,671 - -0.2
1,601,672 + +0.8
1,601,672 + +0.0
1,601,675 + +0.3

Or see this region's nucleotide sequence