Experiment: McCas_H2_complete rubidium chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04120 and MMP_RS04125 are separated by 214 nucleotides MMP_RS04125 and MMP_RS04130 are separated by 102 nucleotides
MMP_RS04120: MMP_RS04120 - hypothetical protein, at 783,205 to 783,807
_RS04120
MMP_RS04125: MMP_RS04125 - TetR/AcrR family transcriptional regulator, at 784,022 to 784,600
_RS04125
MMP_RS04130: MMP_RS04130 - alpha/beta hydrolase, at 784,703 to 785,689
_RS04130
Position (kb) 784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 783.051 kb on - strand at 783.051 kb on - strand at 783.078 kb on + strand at 783.078 kb on + strand at 783.106 kb on + strand at 783.146 kb on - strand at 783.168 kb on + strand at 783.226 kb on + strand at 783.226 kb on + strand at 783.228 kb on + strand at 783.228 kb on + strand at 783.257 kb on - strand at 783.356 kb on - strand, within MMP_RS04120 at 783.418 kb on - strand, within MMP_RS04120 at 783.466 kb on - strand, within MMP_RS04120 at 783.512 kb on + strand, within MMP_RS04120 at 783.569 kb on + strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.679 kb on + strand, within MMP_RS04120 at 783.681 kb on - strand, within MMP_RS04120 at 783.687 kb on - strand, within MMP_RS04120 at 783.693 kb on + strand, within MMP_RS04120 at 783.717 kb on - strand, within MMP_RS04120 at 783.759 kb on - strand at 783.795 kb on - strand at 783.800 kb on - strand at 783.801 kb on + strand at 783.819 kb on + strand at 783.850 kb on - strand at 783.850 kb on - strand at 783.855 kb on - strand at 783.859 kb on + strand at 783.859 kb on + strand at 783.861 kb on - strand at 783.866 kb on - strand at 783.866 kb on - strand at 783.904 kb on - strand at 783.921 kb on - strand at 783.969 kb on - strand at 783.969 kb on - strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.972 kb on + strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.055 kb on + strand at 784.142 kb on + strand, within MMP_RS04125 at 784.504 kb on + strand, within MMP_RS04125 at 784.513 kb on + strand, within MMP_RS04125 at 784.534 kb on - strand, within MMP_RS04125 at 784.547 kb on + strand at 784.573 kb on - strand at 784.576 kb on + strand at 784.576 kb on + strand at 784.610 kb on + strand at 784.649 kb on - strand at 784.650 kb on + strand at 784.653 kb on - strand at 784.658 kb on - strand at 784.671 kb on - strand at 784.765 kb on + strand at 784.823 kb on - strand, within MMP_RS04130 at 784.823 kb on - strand, within MMP_RS04130 at 784.823 kb on - strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.844 kb on + strand, within MMP_RS04130 at 784.873 kb on + strand, within MMP_RS04130 at 784.914 kb on - strand, within MMP_RS04130 at 784.914 kb on - strand, within MMP_RS04130 at 784.970 kb on - strand, within MMP_RS04130 at 785.020 kb on + strand, within MMP_RS04130 at 785.020 kb on + strand, within MMP_RS04130 at 785.073 kb on - strand, within MMP_RS04130 at 785.074 kb on + strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.181 kb on + strand, within MMP_RS04130 at 785.185 kb on - strand, within MMP_RS04130 at 785.185 kb on - strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.187 kb on - strand, within MMP_RS04130 at 785.187 kb on - strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.239 kb on - strand, within MMP_RS04130 at 785.250 kb on - strand, within MMP_RS04130 at 785.301 kb on - strand, within MMP_RS04130 at 785.352 kb on - strand, within MMP_RS04130 at 785.353 kb on + strand, within MMP_RS04130 at 785.385 kb on + strand, within MMP_RS04130 at 785.409 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.475 kb on + strand, within MMP_RS04130 at 785.475 kb on + strand, within MMP_RS04130 at 785.512 kb on + strand, within MMP_RS04130 at 785.537 kb on - strand, within MMP_RS04130 at 785.555 kb on - strand, within MMP_RS04130 at 785.585 kb on - strand, within MMP_RS04130 at 785.585 kb on - strand, within MMP_RS04130
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete rubidium chloride 125 mM remove 783,051 - -0.4 783,051 - -0.0 783,078 + -1.1 783,078 + +0.6 783,106 + -0.6 783,146 - +0.3 783,168 + -0.8 783,226 + -2.1 783,226 + -0.3 783,228 + -0.8 783,228 + -0.6 783,257 - +0.4 783,356 - MMP_RS04120 0.25 -0.4 783,418 - MMP_RS04120 0.35 +1.8 783,466 - MMP_RS04120 0.43 +0.2 783,512 + MMP_RS04120 0.51 -0.6 783,569 + MMP_RS04120 0.60 -0.8 783,667 - MMP_RS04120 0.77 +0.4 783,667 - MMP_RS04120 0.77 -1.4 783,668 + MMP_RS04120 0.77 +0.2 783,668 + MMP_RS04120 0.77 -0.0 783,668 + MMP_RS04120 0.77 +0.2 783,668 + MMP_RS04120 0.77 -0.8 783,671 - MMP_RS04120 0.77 -0.1 783,671 - MMP_RS04120 0.77 +1.3 783,678 - MMP_RS04120 0.78 +0.7 783,678 - MMP_RS04120 0.78 +0.6 783,679 + MMP_RS04120 0.79 -0.2 783,681 - MMP_RS04120 0.79 +1.7 783,687 - MMP_RS04120 0.80 +0.4 783,693 + MMP_RS04120 0.81 +0.2 783,717 - MMP_RS04120 0.85 +1.4 783,759 - +0.1 783,795 - +0.2 783,800 - -0.6 783,801 + -0.2 783,819 + -0.6 783,850 - +0.4 783,850 - +0.5 783,855 - -0.7 783,859 + -0.3 783,859 + -0.0 783,861 - -1.4 783,866 - -0.4 783,866 - -0.0 783,904 - +0.0 783,921 - -0.4 783,969 - +0.2 783,969 - -2.5 783,970 + +0.3 783,970 + +0.3 783,970 + +0.8 783,972 + +0.6 784,017 - +0.4 784,017 - -0.2 784,017 - +0.8 784,018 + -0.4 784,018 + -0.1 784,018 + +0.5 784,019 - +0.3 784,019 - +1.1 784,019 - +0.4 784,020 + +0.6 784,020 + +0.2 784,020 + -0.2 784,020 + -0.3 784,020 + +0.1 784,022 + +1.1 784,022 + -0.2 784,022 + +0.3 784,055 + +0.4 784,142 + MMP_RS04125 0.21 -0.3 784,504 + MMP_RS04125 0.83 +0.4 784,513 + MMP_RS04125 0.85 -0.9 784,534 - MMP_RS04125 0.88 -1.3 784,547 + -1.4 784,573 - +0.6 784,576 + +2.1 784,576 + +1.1 784,610 + -1.3 784,649 - -0.2 784,650 + -1.8 784,653 - +0.4 784,658 - -3.1 784,671 - +1.0 784,765 + -0.5 784,823 - MMP_RS04130 0.12 +0.5 784,823 - MMP_RS04130 0.12 -1.4 784,823 - MMP_RS04130 0.12 +0.4 784,824 + MMP_RS04130 0.12 +0.3 784,824 + MMP_RS04130 0.12 -0.6 784,824 + MMP_RS04130 0.12 -0.9 784,844 + MMP_RS04130 0.14 +0.4 784,873 + MMP_RS04130 0.17 +0.8 784,914 - MMP_RS04130 0.21 -0.1 784,914 - MMP_RS04130 0.21 +1.1 784,970 - MMP_RS04130 0.27 -0.4 785,020 + MMP_RS04130 0.32 +0.8 785,020 + MMP_RS04130 0.32 +0.7 785,073 - MMP_RS04130 0.37 +0.3 785,074 + MMP_RS04130 0.38 -0.1 785,176 - MMP_RS04130 0.48 +0.9 785,176 - MMP_RS04130 0.48 -0.1 785,176 - MMP_RS04130 0.48 -1.1 785,176 - MMP_RS04130 0.48 +1.0 785,176 - MMP_RS04130 0.48 +0.4 785,177 + MMP_RS04130 0.48 -0.9 785,177 + MMP_RS04130 0.48 +0.4 785,177 + MMP_RS04130 0.48 +0.3 785,177 + MMP_RS04130 0.48 +0.3 785,177 + MMP_RS04130 0.48 -0.1 785,181 + MMP_RS04130 0.48 -0.6 785,185 - MMP_RS04130 0.49 -0.3 785,185 - MMP_RS04130 0.49 +1.2 785,186 + MMP_RS04130 0.49 +1.2 785,186 + MMP_RS04130 0.49 +0.1 785,186 + MMP_RS04130 0.49 +1.2 785,187 - MMP_RS04130 0.49 +0.1 785,187 - MMP_RS04130 0.49 +0.3 785,188 + MMP_RS04130 0.49 -0.6 785,188 + MMP_RS04130 0.49 +0.0 785,188 + MMP_RS04130 0.49 -0.4 785,239 - MMP_RS04130 0.54 -0.2 785,250 - MMP_RS04130 0.55 -0.9 785,301 - MMP_RS04130 0.61 -0.4 785,352 - MMP_RS04130 0.66 +0.2 785,353 + MMP_RS04130 0.66 +0.8 785,385 + MMP_RS04130 0.69 -0.5 785,409 - MMP_RS04130 0.72 -0.4 785,474 - MMP_RS04130 0.78 +0.2 785,474 - MMP_RS04130 0.78 +0.8 785,474 - MMP_RS04130 0.78 +0.1 785,475 + MMP_RS04130 0.78 +0.7 785,475 + MMP_RS04130 0.78 +0.2 785,512 + MMP_RS04130 0.82 +0.1 785,537 - MMP_RS04130 0.84 -1.1 785,555 - MMP_RS04130 0.86 +0.4 785,585 - MMP_RS04130 0.89 -1.1 785,585 - MMP_RS04130 0.89 +0.3
Or see this region's nucleotide sequence