Experiment: McCas_H2_complete rubidium chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02540 and MMP_RS02545 are separated by 586 nucleotides MMP_RS02545 and MMP_RS02550 are separated by 249 nucleotides MMP_RS02550 and MMP_RS02555 are separated by 1 nucleotides
MMP_RS02540: MMP_RS02540 - DUF2283 domain-containing protein, at 474,413 to 474,790
_RS02540
MMP_RS02545: MMP_RS02545 - hypothetical protein, at 475,377 to 475,787
_RS02545
MMP_RS02550: MMP_RS02550 - helix-turn-helix transcriptional regulator, at 476,037 to 476,249
_RS02550
MMP_RS02555: MMP_RS02555 - AIPR family protein, at 476,251 to 478,203
_RS02555
Position (kb) 475
476 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 474.657 kb on + strand, within MMP_RS02540 at 474.714 kb on - strand, within MMP_RS02540 at 474.742 kb on + strand, within MMP_RS02540 at 474.742 kb on + strand, within MMP_RS02540 at 474.746 kb on - strand, within MMP_RS02540 at 474.746 kb on - strand, within MMP_RS02540 at 474.746 kb on - strand, within MMP_RS02540 at 474.747 kb on + strand, within MMP_RS02540 at 474.766 kb on + strand at 474.814 kb on - strand at 474.814 kb on - strand at 474.839 kb on - strand at 474.840 kb on + strand at 474.841 kb on - strand at 474.841 kb on - strand at 474.846 kb on - strand at 474.847 kb on + strand at 474.847 kb on + strand at 474.852 kb on + strand at 474.880 kb on + strand at 474.883 kb on - strand at 474.900 kb on + strand at 475.037 kb on - strand at 475.271 kb on - strand at 475.350 kb on - strand at 475.413 kb on + strand at 475.414 kb on - strand at 475.415 kb on + strand at 475.459 kb on + strand, within MMP_RS02545 at 475.480 kb on + strand, within MMP_RS02545 at 475.504 kb on + strand, within MMP_RS02545 at 475.548 kb on - strand, within MMP_RS02545 at 475.605 kb on + strand, within MMP_RS02545 at 475.710 kb on - strand, within MMP_RS02545 at 475.724 kb on + strand, within MMP_RS02545 at 475.800 kb on - strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.849 kb on - strand at 475.849 kb on - strand at 475.850 kb on + strand at 475.853 kb on - strand at 475.853 kb on - strand at 475.853 kb on - strand at 475.854 kb on + strand at 475.854 kb on + strand at 475.855 kb on - strand at 475.856 kb on + strand at 475.917 kb on - strand at 475.917 kb on - strand at 475.928 kb on + strand at 475.937 kb on - strand at 475.938 kb on + strand at 475.942 kb on + strand at 475.951 kb on + strand at 476.012 kb on + strand at 476.040 kb on - strand at 476.099 kb on + strand, within MMP_RS02550 at 476.116 kb on + strand, within MMP_RS02550 at 476.127 kb on - strand, within MMP_RS02550 at 476.129 kb on - strand, within MMP_RS02550 at 476.170 kb on + strand, within MMP_RS02550 at 476.170 kb on + strand, within MMP_RS02550 at 476.179 kb on - strand, within MMP_RS02550 at 476.253 kb on + strand at 476.255 kb on + strand at 476.290 kb on + strand at 476.314 kb on + strand at 476.337 kb on - strand at 476.377 kb on - strand at 476.408 kb on - strand at 476.409 kb on + strand at 476.445 kb on - strand at 476.446 kb on + strand at 476.453 kb on + strand, within MMP_RS02555 at 476.477 kb on - strand, within MMP_RS02555 at 476.478 kb on + strand, within MMP_RS02555 at 476.478 kb on + strand, within MMP_RS02555 at 476.478 kb on + strand, within MMP_RS02555 at 476.479 kb on - strand, within MMP_RS02555 at 476.510 kb on + strand, within MMP_RS02555 at 476.529 kb on - strand, within MMP_RS02555 at 476.562 kb on + strand, within MMP_RS02555 at 476.620 kb on + strand, within MMP_RS02555 at 476.648 kb on + strand, within MMP_RS02555 at 476.652 kb on - strand, within MMP_RS02555 at 476.685 kb on - strand, within MMP_RS02555 at 476.711 kb on + strand, within MMP_RS02555 at 476.714 kb on + strand, within MMP_RS02555 at 476.773 kb on - strand, within MMP_RS02555
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete rubidium chloride 125 mM remove 474,657 + MMP_RS02540 0.65 +0.5 474,714 - MMP_RS02540 0.80 -0.4 474,742 + MMP_RS02540 0.87 -0.1 474,742 + MMP_RS02540 0.87 -1.4 474,746 - MMP_RS02540 0.88 +0.3 474,746 - MMP_RS02540 0.88 -0.9 474,746 - MMP_RS02540 0.88 -0.7 474,747 + MMP_RS02540 0.88 +1.4 474,766 + -0.4 474,814 - -0.9 474,814 - +0.7 474,839 - +0.3 474,840 + +0.3 474,841 - +1.5 474,841 - -0.2 474,846 - +0.1 474,847 + +0.4 474,847 + +0.3 474,852 + +0.1 474,880 + +1.0 474,883 - +1.1 474,900 + +2.0 475,037 - +0.4 475,271 - +0.4 475,350 - +0.3 475,413 + +0.4 475,414 - -0.2 475,415 + -0.6 475,459 + MMP_RS02545 0.20 -0.9 475,480 + MMP_RS02545 0.25 -2.3 475,504 + MMP_RS02545 0.31 +0.6 475,548 - MMP_RS02545 0.42 -0.8 475,605 + MMP_RS02545 0.55 -1.0 475,710 - MMP_RS02545 0.81 -1.4 475,724 + MMP_RS02545 0.84 -0.3 475,800 - +2.4 475,847 - +0.6 475,847 - -1.5 475,847 - +0.9 475,848 + +0.8 475,848 + +0.5 475,848 + -0.4 475,849 - -0.2 475,849 - +0.1 475,850 + +1.2 475,853 - -0.3 475,853 - +0.4 475,853 - +0.0 475,854 + -1.4 475,854 + -0.6 475,855 - +0.4 475,856 + +1.0 475,917 - +0.6 475,917 - +0.1 475,928 + -0.4 475,937 - -0.8 475,938 + -0.9 475,942 + -1.1 475,951 + -0.5 476,012 + -1.4 476,040 - -0.2 476,099 + MMP_RS02550 0.29 -0.4 476,116 + MMP_RS02550 0.37 -0.0 476,127 - MMP_RS02550 0.42 +0.9 476,129 - MMP_RS02550 0.43 -1.2 476,170 + MMP_RS02550 0.62 -0.9 476,170 + MMP_RS02550 0.62 +0.5 476,179 - MMP_RS02550 0.67 -0.7 476,253 + +0.9 476,255 + +0.3 476,290 + -0.6 476,314 + -1.1 476,337 - +1.0 476,377 - -0.4 476,408 - +0.2 476,409 + -1.9 476,445 - -0.4 476,446 + +1.0 476,453 + MMP_RS02555 0.10 +0.7 476,477 - MMP_RS02555 0.12 +0.6 476,478 + MMP_RS02555 0.12 -0.2 476,478 + MMP_RS02555 0.12 +5.5 476,478 + MMP_RS02555 0.12 -0.6 476,479 - MMP_RS02555 0.12 +1.7 476,510 + MMP_RS02555 0.13 -0.1 476,529 - MMP_RS02555 0.14 +0.6 476,562 + MMP_RS02555 0.16 -0.2 476,620 + MMP_RS02555 0.19 -1.1 476,648 + MMP_RS02555 0.20 -1.0 476,652 - MMP_RS02555 0.21 +0.6 476,685 - MMP_RS02555 0.22 -1.2 476,711 + MMP_RS02555 0.24 +1.5 476,714 + MMP_RS02555 0.24 +0.8 476,773 - MMP_RS02555 0.27 +0.7
Or see this region's nucleotide sequence