Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00810

Experiment: McCas_H2_complete rubidium chloride 125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00805 and MMP_RS00810 are separated by 45 nucleotidesMMP_RS00810 and MMP_RS00815 are separated by 29 nucleotides MMP_RS00805: MMP_RS00805 - carbamoyltransferase HypF, at 148,268 to 150,583 _RS00805 MMP_RS00810: MMP_RS00810 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 150,629 to 151,501 _RS00810 MMP_RS00815: MMP_RS00815 - thiamine pyrophosphate-binding protein, at 151,531 to 153,036 _RS00815 Position (kb) 150 151 152Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 149.635 kb on + strandat 149.639 kb on - strandat 149.761 kb on - strandat 149.802 kb on - strandat 149.843 kb on + strandat 149.846 kb on + strandat 150.058 kb on - strandat 150.353 kb on - strandat 150.353 kb on - strandat 150.353 kb on - strandat 150.566 kb on - strandat 150.567 kb on + strandat 150.641 kb on - strandat 150.700 kb on - strandat 150.742 kb on - strand, within MMP_RS00810at 150.812 kb on + strand, within MMP_RS00810at 150.813 kb on - strand, within MMP_RS00810at 150.813 kb on - strand, within MMP_RS00810at 150.813 kb on - strand, within MMP_RS00810at 150.843 kb on - strand, within MMP_RS00810at 150.843 kb on - strand, within MMP_RS00810at 150.847 kb on - strand, within MMP_RS00810at 150.885 kb on + strand, within MMP_RS00810at 151.021 kb on + strand, within MMP_RS00810at 151.105 kb on - strand, within MMP_RS00810at 151.159 kb on - strand, within MMP_RS00810at 151.264 kb on + strand, within MMP_RS00810at 151.277 kb on - strand, within MMP_RS00810at 151.277 kb on - strand, within MMP_RS00810at 151.570 kb on - strandat 151.608 kb on + strandat 151.743 kb on - strandat 151.839 kb on - strandat 151.998 kb on - strandat 152.020 kb on - strandat 152.128 kb on - strandat 152.140 kb on + strandat 152.154 kb on - strandat 152.165 kb on + strandat 152.179 kb on - strandat 152.179 kb on - strandat 152.185 kb on + strandat 152.185 kb on + strandat 152.185 kb on + strandat 152.420 kb on - strandat 152.426 kb on + strandat 152.438 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete rubidium chloride 125 mM
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149,635 + +0.5
149,639 - +0.7
149,761 - -0.2
149,802 - -1.4
149,843 + -1.0
149,846 + -4.3
150,058 - +1.1
150,353 - -1.2
150,353 - -0.2
150,353 - -4.5
150,566 - -0.6
150,567 + -1.1
150,641 - +0.8
150,700 - -0.8
150,742 - MMP_RS00810 0.13 -0.8
150,812 + MMP_RS00810 0.21 -0.9
150,813 - MMP_RS00810 0.21 -1.2
150,813 - MMP_RS00810 0.21 -1.5
150,813 - MMP_RS00810 0.21 -0.5
150,843 - MMP_RS00810 0.25 -1.4
150,843 - MMP_RS00810 0.25 +0.6
150,847 - MMP_RS00810 0.25 -4.0
150,885 + MMP_RS00810 0.29 +0.4
151,021 + MMP_RS00810 0.45 -0.0
151,105 - MMP_RS00810 0.55 -0.5
151,159 - MMP_RS00810 0.61 -2.0
151,264 + MMP_RS00810 0.73 -1.7
151,277 - MMP_RS00810 0.74 -0.2
151,277 - MMP_RS00810 0.74 -0.8
151,570 - +1.1
151,608 + -0.8
151,743 - +0.5
151,839 - +0.3
151,998 - -1.4
152,020 - -1.6
152,128 - +0.3
152,140 + -0.1
152,154 - +1.5
152,165 + +1.7
152,179 - -2.7
152,179 - -0.3
152,185 + +0.4
152,185 + -0.3
152,185 + +0.7
152,420 - -0.7
152,426 + +0.6
152,438 + -0.5

Or see this region's nucleotide sequence